XLOC_023501 (eif5a)


Basic Information

Item Value
gene id XLOC_023501
gene name eif5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 26481300 ~ 26485345 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046488
CGTGTTTGAACTTGCCCCTTGTTTAGATCCCCATCATGGCAGATCCAGATCTTGATTTCGCCAGCGGAGATGCCGGGGCTTCTGCCACTTACCCCATGCAGTGCAGCGCCCTGCGCAAGAACGGGTTTGTGGTGCTGAAGGGTCGCCCCTGCAAAATTGTTGAAATGTCCACCTCTAAGACTGGCAAGCACGGTCATGCAAAGGTTCACCTGGTTGGAATTGACATTTTCACAAATAAGAAGTATGAAGATATCTGCCCCTCCACCCACAACATGGACGTGCCTAACATCAAAAGAAATGACTACCAGTTGGTTGACATCAGCGAGGGATTCCTCTCTCTTATGATGGACAACGGTGATGTGCGTGAGGACTTGCGTGTGCCAGACGGTGACCTGGGCAAAGAAATCGAAAACAAATTTGCAGCTGGTGAAGAAATGTTGGTGACTGTGCTTTCAGCTATGGGCGAAGAATCTGCAGTGGCTCTCAAACCCATGACCAAATAGAAAGAGAGACTGGGCTGCTCAGGCTGCAACATGCTACACTTTAACAAATCTCtcgcatttgtttttcttttggtttTATTTGTCACCAAAGCTATGGCCTTCACAAGCAACCTCAATTTTTTTGTTGTGATTGTATTCCTTTTTTCTTCTCCTTCCAATACTGTGCTGGACTTGTCGAGTCAGTTGGCATTCTCTCGGGTAAGAGGTTTATTATTGTCAGTGTTTACCCCACCTCAACCTCCCCATTCCACACTTTCCCCCCTCAAGTTTTTACCACTTACATTCCTGAATGTTAAATAATGGGATCcatttttcctttttatatatattcttgAATTTCGAAACGGTAATTAATTTGCAGGATTTATACAAGGAAGAGAAAAACCTCCCCAAACTGacactgaacttttttttttctcctccctcTATGGGTGCCATATTTTTCTCCTTACATGATCTGTGCCACGCTGGCACTATAATTCATTTTGCTCAATTGAATGCCTCTAACCCAACCTCCACCCCAAAACAAGATGCACGCTGGTAGTTGGCACTTCCCAGTACTTTTGAGTACCTTCTCAAGTAAACCCGAGAAATAAACTCCAGTGAAATGTCCTCTTCAATGCCAGTCTCTAATTGTTCAGAAGTGGAAAGGATGTGATGGCCATGTGCGAATACCTCTGTAACACAATAGCAGCCAGCTTGATTTTTGGCTGTCATTGGCAACCTTAAATAAAGTGTTGAAGCCTGTATTTGTCTCCAGGTAGGCTCTTATCAGTGCTGCCCCAGAATGAGCTCAAGCTCTAAAGGACTAAATCTTGATGTGAGTTCAATTCTTCCTTTTGATCACTCGAGGCCTTTGTCACCTGACTTGagagagcaaaaataaaaacgtaatagattaccttatttatttattttatgttgttttaataaaGCGCTTGATCAGTATTAAGAACTTCTAGAAGTATGGTAGAGCTTGTTTTCAAAGCTTTTAACACATGAACAATTTTATCACACGGTCTTTGGAGTAGGGGTGGCTGATCTCTTTTATTTTGTGATCTTTAATGCAGTATTTTTAAGTTGTTCAATCAGTCCTAGACTTGTTCTGGTCTGGATCTATTCGATGATAAATCTCAAAATAGGGATAATCCATTCAGATTGTGATCGTTTTAGTCTGTATGGTCAGCCAGCCCTACAATGGAGAATTTTTGTGTTTCTTTAAATATTACCTATTCTAACGTGTCTGGTGTTTTGGACAATACAGTTTAATAAGGTACAGATGTTCTACTTTAATTAGACGGTGACTTTATGAGGTTATTATACTGGGAGCATCACAATTGTTTAGTAGCACAGTCTGCAATGTTTATATGTTCTCAAATTAAaggtaaaatatattaaacatgaaTACAAATA
>TCONS_00046489
GCAGAAGAAGAGGAATCCCGCCCACTGTACGGATGCCGCATTAAAATTGGCCGCGCATGCGCGTTGACGTTCCTTTTTTTCTTGGAATGCCCCTTGTTTAGATCCCCATCATGGCAGATCCAGATCTTGATTTCGCCAGCGGAGATGCCGGGGCTTCTGCCACTTACCCCATGCAGTGCAGCGCCCTGCGCAAGAACGGGTTTGTGGTGCTGAAGGGTCGCCCCTGCAAAATTGTTGAAATGTCCACCTCTAAGACTGGCAAGCACGGTCATGCAAAGGTTCACCTGGTTGGAATTGACATTTTCACAAATAAGAAGTATGAAGATATCTGCCCCTCCACCCACAACATGGACGTGCCTAACATCAAAAGAAATGACTACCAGTTGGTTGACATCAGCGAGGGATTCCTCTCTCTTATGATGGACAACGGTGATGTGCGTGAGGACTTGCGTGTGCCAGACGGTGACCTGGGCAAAGAAATCGAAAACAAATTTGCAGCTGGTGAAGAAATGTTGGTGACTGTGCTTTCAGCTATGGGCGAAGAATCTGCAGTGGCTCTCAAACCCATGACCAAATAGAAAGAGAGACTGGGCTGCTCAGGCTGCAACATGCTACACTTTAACAAATCTCtcgcatttgtttttcttttggtttTATTTGTCACCAAAGCTATGGCCTTCACAAGCAACCTCAATTTTTTTGTTGTGATTGTATTCCTTTTTTCTTCTCCTTCCAATACTGTGCTGGACTTGTCGAGTCAGTTGGCATTCTCTCGGGTAAGAGGTTTATTATTGTCAGTGTTTACCCCACCTCAACCTCCCCATTCCACACTTTCCCCCCTCAAGTTTTTACCACTTACATTCCTGAATGTTAAATAATGGGATCcatttttcctttttatatatattcttgAATTTCGAAACGGTAATTAATTTGCAGGATTTATACAAGGAAGAGAAAAACCTCCCC
>TCONS_00046490
TGGAAGTAAGTGCTGCATGGAGCGTGTTTGAACTGTAATGAAAAATAACACACAACTTTTCTGCGTTTATGGTTTCCGGAAAACGCCGTCTGCGTTGAGCGCGTGCGTCTCGACGGTGAACGTGACCGGATCGTCTTGAAAAAAACGCGTAACGGCGCTTGGTTAACGGACGGCTCGTGGAGCGGCTCTGGTTCACAGGCCGCAAGCAAACAGCCGCACGCGCGACTCGCAGGCCTTCCTAGCGCGCGGTGACTTGACTGAAATACAGTGCCCCTTGTTTAGATCCCCATCATGGCAGATCCAGATCTTGATTTCGCCAGCGGAGATGCCGGGGCTTCTGCCACTTACCCCATGCAGTGCAGCGCCCTGCGCAAGAACGGGTTTGTGGTGCTGAAGGGTCGCCCCTGCAAAATTGTTGAAATGTCCACCTCTAAGACTGGCAAGCACGGTCATGCAAAGGTTCACCTGGTTGGAATTGACATTTTCACAAATAAGAAGTATGAAGATATCTGCCCCTCCACCCACAACATGGACGTGCCTAACATCAAAAGAAATGACTACCAGTTGGTTGACATCAGCGAGGGATTCCTCTCTCTTATGATGGACAACGGTGATGTGCGTGAGGACTTGCGTGTGCCAGACGGTGACCTGGGCAAAGAAATCGAAAACAAATTTGCAGCTGGTGAAGAAATGTTGGTGACTGTGCTTTCAGCTATGGGCGAAGAATCTGCAGTGGCTCTCAAACCCATGACCAAATAGAAAGAGAGACTGGGCTGCTCAGGCTGCAACATGCTACACTTTAACAAATCTCtcgcatttgtttttcttttggtttTATTTGTCACCAAAGCTATGGCCTTCACAAGCAACCTCAATTTTTTTGTTGTGATTGTATTCCTTTTTTCTTCTCCTTCCAATACTGTGCTGGACTTGTCGAGTCAGTTGGCATTCTCTCGGGTAAGAGGTTTATTATTGTCAGTGTTTACCCCACCTCAACCTCCCCATTCCACACTTTCCCCCCTCAAGTTTTTACCACTTACATTCCTGAATGTTAAATAATGGGATCcatttttcctttttatatatattcttgAATTTCGAAACGGTAATTAATTT
>TCONS_00046491
ACGGACGGCTCGTGGAGCGGCTCTGGTTCACAGGCCGCAAGCAAACAGCCGCACGCGCGACTCGCAGGCCTTCCTAGCGCGCGGTGACTTGACTGAAATACAGATCCCCATCATGGCAGATCCAGATCTTGATTTCGCCAGCGGAGATGCCGGGGCTTCTGCCACTTACCCCATGCAGTGCAGCGCCCTGCGCAAGAACGGGTTTGTGGTGCTGAAGGGTCGCCCCTGCAAAATTGTTGAAATGTCCACCTCTAAGACTGGCAAGCACGGTCATGCAAAGGTTCACCTGGTTGGAATTGACATTTTCACAAATAAGAAGTATGAAGATATCTGCCCCTCCACCCACAACATGGACGTGCCTAACATCAAAAGAAATGACTACCAGTTGGTTGACATCAGCGAGGGATTCCTCTCTCTTATGATGGACAACGGTGATGTGCGTGAGGACTTGCGTGTGCCAGACGGTGACCTGGGCAAAGAAATCGAAAACAAATTTGCAGCTGGTGAAGAAATGTTGGTGACTGTGCTTTCAGCTATGGGCGAAGAATCTGCAGTGGCTCTCAAACCCATGACCAAATAGAAAGAGAGACTGGGCTGCTCAGGCTGCAACATGCTACACTTTAACAAATCTCtcgcatttgtttttcttttggtttTATTTGTCACCAAAGCTATGGCCTTCACAAGCAACCTCAATTTTTTTGTTGTGATTGTATTCCTTTTTTCTTCTCCTTCCAATACTGTGCTGGACTTGTCGAGTCAGTTGGCATTCTCTCGGGTAAGAGGTTTATTATTGTCAGTGTTTACCCCACCTCAACCTCCCCATTCCACACTTTCCCCCCTC
>TCONS_00046492
ATTTTTGACATCCAAACCCACTCATATACTGTCATTCTCCCCTCCAGTGCCCCTTGTTTAGATCCCCATCATGGCAGATCCAGATCTTGATTTCGCCAGCGGAGATGCCGGGGCTTCTGCCACTTACCCCATGCAGTGCAGCGCCCTGCGCAAGAACGGGTTTGTGGTGCTGAAGGGTCGCCCCTGCAAAATTGTTGAAATGTCCACCTCTAAGACTGGCAAGCACGGTCATGCAAAGGTTCACCTGGTTGGAATTGACATTTTCACAAATAAGAAGTATGAAGATATCTGCCCCTCCACCCACAACATGGACGTGCCTAACATCAAAAGAAATGACTACCAGTTGGTTGACATCAGCGAGGGATTCCTCTCTCTTATGATGGACAACGGTGATGTGCGTGAGGACTTGCGTGTGCCAGACGGTGACCTGGGCAAAGAAATCGAAAACAAATTTGCAGCTGGTGAAGAAATGTTGGTGACTGTGCTTTCAGCTATGGGCGAAGAATCTGCAGTGGCTCTCAAACCCATGACCAAATAGAAAGAGAGACTGGGCTGCTCAGGCTGCAACATGCTACACTTTAACAAATCTCtcgcatttgtttttctttt
>TCONS_00046493
GCATTAAAATTGGCCGCGCATGCGCGTTGACGTTCCTTTTTTTCTTGGAAATCCCCATCATGGCAGATCCAGATCTTGATTTCGCCAGCGGAGATGCCGGGGCTTCTGCCACTTACCCCATGCAGTGCAGCGCCCTGCGCAAGAACGGGTTTGTGGTGCTGAAGGGTCGCCCCTGCAAAATTGTTGAAATGTCCACCTCTAAGACTGGCAAGCACGGTCATGCAAAGGTTCACCTGGTTGGAATTGACATTTTCACAAATAAGAAGTATGAAGATATCTGCCCCTCCACCCACAACATGGACGTGCCTAACATCAAAAGAAATGACTACCAGTTGGTTGACATCAGCGAGGGATTCCTCTCTCTTATGATGGACAACGGTGATGTGCGTGAGGACTTGCGTGTGCCA

Function

symbol description
eif5a Predicted to enable translation elongation factor activity. Predicted to be involved in positive regulation of translational elongation. Predicted to act upstream of or within several processes, including mRNA transport; positive regulation of translational termination; and translation. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be part of nuclear pore. Is expressed in endoderm; intestine; liver; pancreas; and swim bladder. Orthologous to several human genes including EIF5A (eukaryotic translation initiation factor 5A).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0045901 positive regulation of translational elongation biological_process
GO:0045905 positive regulation of translational termination biological_process
GO:0043022 ribosome binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-040426-2229 Predicted to enable translation elongation factor activity. Predicted to be involved in positive regulation of translational elongation. Predicted to act upstream of or within several processes, including mRNA transport; positive regulation of translational termination; and translation. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be part of nuclear pore. Is expressed in endoderm; intestine; liver; pancreas; and swim bladder. Orthologous to several human genes including EIF5A (eukaryotic translation initiation factor 5A).

Ensembl:

ensembl_id ENSDARG00000017235

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046488 False 1916 mRNA 0.41 5 26481300 26485241
TCONS_00046489 False 969 mRNA 0.46 5 26482322 26485345
TCONS_00046490 False 1116 mRNA 0.47 5 26482356 26485263
TCONS_00046491 False 844 mRNA 0.49 5 26482449 26485098
TCONS_00046492 False 609 mRNA 0.48 4 26482642 26484298
TCONS_00046493 True 407 mRNA 0.50 4 26482912 26485308

Neighbor

gene id symbol gene type direction distance location
XLOC_023500 rpl22l1 coding downstream 1459 26475182 ~ 26479841 (-)
XLOC_023499 slc7a14b coding downstream 20447 26446321 ~ 26460853 (-)
XLOC_023498 zgc:194621 coding downstream 81677 26395205 ~ 26399623 (-)
XLOC_023497 skilb coding downstream 94318 26373341 ~ 26386982 (-)
XLOC_023496 NA coding downstream 112115 26354696 ~ 26369185 (-)
XLOC_023502 tnikb coding upstream 6559 26491904 ~ 26632182 (-)
XLOC_023503 NA coding upstream 156554 26641899 ~ 26648023 (-)
XLOC_023504 pld1b coding upstream 173665 26659010 ~ 26715174 (-)
XLOC_023505 fndc3bb coding upstream 268611 26753956 ~ 26885897 (-)
XLOC_023506 msl2b coding upstream 455852 26941197 ~ 26945390 (-)
XLOC_023665 dre-mir-735 misc upstream 11692616 38177961 ~ 38178027 (-)
XLOC_023491 NA non-coding downstream 244722 26232700 ~ 26236578 (-)
XLOC_023490 NA non-coding downstream 449029 26031248 ~ 26032271 (-)
XLOC_023487 NA non-coding downstream 727154 25750636 ~ 25754146 (-)
XLOC_023471 NA non-coding downstream 1651899 24800776 ~ 24829401 (-)
XLOC_023507 NA non-coding upstream 463367 26948712 ~ 26995164 (-)
XLOC_023517 NA non-coding upstream 977591 27462936 ~ 27463524 (-)
XLOC_023518 NA non-coding upstream 978216 27463561 ~ 27464451 (-)
XLOC_023520 NA non-coding upstream 1004470 27489815 ~ 27491197 (-)

Expression


Co-expression Network