G430860


Basic Information

Item Value
gene id G430860
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 68185680 ~ 68190109 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU487996
TTGACACGCCTCCAGAATATGGCCATGATGAAGACAGCAGTGATGGGAGGAGCCAGGTAGCTGGTGATGGCCTGGATGTAGTCAAACAGCTGTCCACTGTTGGCTGACTGGATGATGGGGATCCACAGAATGCTGAGCACCACCATTACTAAGATGAACACCCTGCAGGTGATGACCACAAACAGGAGCGATGCCTCCTGCTGCTCCAGTGCCAGCTAGTCCAATGAACAAACCACTGCCAACATTACTGGACATCAGAGAGGCCCCAATCTGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU487996 True 275 lncRNA 0.53 2 68185680 68190109

Neighbor

gene id symbol gene type direction distance location
LOC110524419 LOC106613886 coding upstream 132783 68010191 ~ 68052897 (+)
LOC110524415 LOC106613887 coding upstream 185403 67996354 ~ 68000277 (+)
depdc1a LOC106613883 coding upstream 190326 67987179 ~ 67995354 (+)
lrrc40 lrrc40 coding upstream 375358 67802829 ~ 67810322 (+)
sox2 sox2 coding upstream 561325 67622271 ~ 67624355 (+)
LOC110524422 gsh0 coding downstream 3643 68193752 ~ 68200853 (+)
LOC110524423 LOC106613476 coding downstream 22115 68212224 ~ 68214236 (+)
elavl4 LOC106613894 coding downstream 457707 68647816 ~ 68716531 (+)
LOC110524431 LOC106613897 coding downstream 720825 68910934 ~ 68936736 (+)
LOC118964640 NA coding downstream 1006273 69196382 ~ 69222310 (+)
G430837 NA non-coding upstream 28250 68157227 ~ 68157430 (+)
G430828 NA non-coding upstream 41061 68144163 ~ 68144619 (+)
G430826 NA non-coding upstream 43552 68141846 ~ 68142128 (+)
G430816 NA non-coding upstream 57273 68128064 ~ 68128407 (+)
G430808 NA non-coding upstream 66817 68118445 ~ 68118863 (+)
G430863 NA non-coding downstream 3 68190112 ~ 68190726 (+)
G430948 NA non-coding downstream 134715 68324824 ~ 68396956 (+)
G431028 NA non-coding downstream 250515 68440624 ~ 68520768 (+)
G431188 NA non-coding downstream 554654 68744763 ~ 68752767 (+)
G431309 NA non-coding downstream 635542 68825651 ~ 68825945 (+)
G430796 LOC106613888 other upstream 82146 68103179 ~ 68103534 (+)
LOC110524407 LOC106613876 other upstream 721357 67458540 ~ 67464323 (+)
G429156 NA other upstream 1137516 66981949 ~ 67048164 (+)
G428696 NA other upstream 2043075 66142079 ~ 66142605 (+)
G427747 NA other upstream 2664300 65453856 ~ 65521380 (+)
G434653 NA other downstream 2769501 70959610 ~ 70959932 (+)
G434792 LOC106613943 other downstream 3028680 71218789 ~ 71223578 (+)
G434829 NA other downstream 3108506 71298615 ~ 71298900 (+)
ralgps2 LOC106613957 other downstream 3485762 71552653 ~ 71687963 (+)

Expression


Co-expression Network