XLOC_023503


Basic Information

Item Value
gene id XLOC_023503
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 26641899 ~ 26648023 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046868
CTGTGCTGTGCATTCCAAGATGAAAAGTACCTTTATTTGTGTGATGGAGTTCATGCCAGGTGGAGATCTGGTGACTCTGACCAGCAATGACATTTCAGAGGAATGGGCTCAATTCTATACGGCAGAAGTGGTGCTGGCACTCGACGCCATCCATTCTCTGGGCTTCATCCACAGAAACATCAAACCAGACAACATGCTGCTGGACCGCAATGGACACCTCAAACTCGCAGACTTTGGCACATGTACGAAGATGGACTCGACTGGTATGGTAAGCTGTGACGCTGCTGTTGGGACACCTGATTACATTTCTCCAGAGGTTTTAATGTCTCAAGGATGGACTGGTTATTACGGTCGCGAGTGAGACTGGTGGTCTGTTGGTGTTTTTATTTATGAGCTTCTAGTGGGCGACACTCCATTTTATTCCGAGTCTCTGGTGGGCACATATGGAAAGATCATGGATCACAAGAACAGCTTAACTTTCCCAGATGATATTGAAATGTCAAAGGATGCCAAAGACCTCATCTGTGCCTTTCTGAGTAGCAGGTGGGACTGA
>TCONS_00047209
ATgagcaaatattattttctaactCTTACAGTTCTGCTCAGCCTTTTTTCTCAGATACAGAGTGGCGTTTTACATCAAGGAAAATACAGACAAGTCCTTGAAAATGATGAGGTCAGAGTCATTTGTCTTCATGTTGACTTTTAACAGCTACCCAGTAAAGTTTTTCTAGGAAACACCACAGACCTTCGTGTTCGTTTAAGCAATTTGAGCTCCATATCATCTGATGATCTGAAGATTTTCTCCCATCTGAGGCATCTCAGTCTGACCAGAAACCAACTGCAAACATTACCTGCGGATCTGCTCGTGGGCCTGTCTAATCTTTATGTGCTTGACCTTTACAGCTGTGCTGTGCATTCCAAGATGAAAAGTACCTTTATTTGTGTGATGGAGTTCATGCCAGGTGGAGATCTGGTGACTCTGACCAGCAATGACATTTCAGAGGAATGGGCTCAATTCTATACGGCAGAAGTGGTGCTGGCACTCGACGCCATCCATTCTCTGGGCTTCATCCACAGAAACATCAAACCAGACAACATGCTGCTGGACCGCAATGGACACCTCAAACTCGCAGACTTTGGCACATGTACGAAGATGGACTCGACTGGTATGGTAAGCTGTGACGCTGCTGTTGGGACACCTGATTACATTTCTCCAGAGGTTTTAATGTCTCAAGGATGGACTGGTTATTACGGTCGCGAGTGAGACTGGTGGTCTGTTGGTGTTTTTATTTATGAGCTTCTAGTGGGCGACACTCCATTTTATTCCGAGTCTCTGGTGGGCACATATGGAAAGATCATGGATCACAAGAACAGCTTAACTTTCCCAGATGATATTGAAATGTCAAAGGATGCCAAAGACCTCATCTGTGCCTTTCTGAGTAGCAGGTGGGACTGA

Function

GO:

id name namespace
GO:0070373 negative regulation of ERK1 and ERK2 cascade biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046868 False 553 lncRNA 0.47 3 26641899 26644190
TCONS_00047209 True 894 lncRNA 0.44 4 26641899 26648023

Neighbor

gene id symbol gene type direction distance location
XLOC_023502 tnikb coding downstream 9717 26491904 ~ 26632182 (-)
XLOC_023501 eif5a coding downstream 156554 26481300 ~ 26485345 (-)
XLOC_023500 rpl22l1 coding downstream 162058 26475182 ~ 26479841 (-)
XLOC_023499 slc7a14b coding downstream 181046 26446321 ~ 26460853 (-)
XLOC_023498 zgc:194621 coding downstream 242276 26395205 ~ 26399623 (-)
XLOC_023504 pld1b coding upstream 10987 26659010 ~ 26715174 (-)
XLOC_023505 fndc3bb coding upstream 105933 26753956 ~ 26885897 (-)
XLOC_023506 msl2b coding upstream 293174 26941197 ~ 26945390 (-)
XLOC_023507 NA coding upstream 300689 26948712 ~ 26995164 (-)
XLOC_023508 zmynd11 coding upstream 575929 27223952 ~ 27256673 (-)
XLOC_023665 dre-mir-735 misc upstream 11529938 38177961 ~ 38178027 (-)
XLOC_023496 NA non-coding downstream 272714 26354696 ~ 26369185 (-)
XLOC_023491 NA non-coding downstream 405321 26232700 ~ 26236578 (-)
XLOC_023490 NA non-coding downstream 609628 26031248 ~ 26032271 (-)
XLOC_023487 NA non-coding downstream 887753 25750636 ~ 25754146 (-)
XLOC_023471 NA non-coding downstream 1812498 24800776 ~ 24829401 (-)
XLOC_023517 NA non-coding upstream 814913 27462936 ~ 27463524 (-)
XLOC_023518 NA non-coding upstream 815538 27463561 ~ 27464451 (-)
XLOC_023520 NA non-coding upstream 841792 27489815 ~ 27491197 (-)
XLOC_023521 NA non-coding upstream 1108853 27756876 ~ 27776814 (-)

Expression


Co-expression Network