Item | Value |
---|---|
gene id | XLOC_023507 |
gene name | NA |
gene type | non-coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007135.7 |
NCBI id | CM002908.2 |
chromosome length | 42172926 |
location | 26948712 ~ 26995164 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
id | name | namespace |
---|---|---|
GO:1903371 | regulation of endoplasmic reticulum tubular network organization | biological_process |
GO:0022402 | cell cycle process | biological_process |
GO:1903373 | positive regulation of endoplasmic reticulum tubular network organization | biological_process |
GO:0006325 | chromatin organization | biological_process |
GO:0034968 | histone lysine methylation | biological_process |
GO:0006335 | DNA replication-dependent nucleosome assembly | biological_process |
GO:0034723 | DNA replication-dependent nucleosome organization | biological_process |
GO:0006974 | cellular response to DNA damage stimulus | biological_process |
GO:1901836 | regulation of transcription of nucleolar large rRNA by RNA polymerase I | biological_process |
GO:0006996 | organelle organization | biological_process |
GO:0042790 | nucleolar large rRNA transcription by RNA polymerase I | biological_process |
GO:0007049 | cell cycle | biological_process |
GO:0051276 | chromosome organization | biological_process |
GO:0033554 | cellular response to stress | biological_process |
GO:0006259 | DNA metabolic process | biological_process |
GO:0006260 | DNA replication | biological_process |
GO:0006261 | DNA-dependent DNA replication | biological_process |
GO:0071786 | endoplasmic reticulum tubular network organization | biological_process |
GO:0005761 | mitochondrial ribosome | cellular_component |
GO:0005762 | mitochondrial large ribosomal subunit | cellular_component |
GO:0098826 | endoplasmic reticulum tubular network membrane | cellular_component |
GO:0000313 | organellar ribosome | cellular_component |
GO:0000315 | organellar large ribosomal subunit | cellular_component |
GO:0044422 | obsolete organelle part | cellular_component |
GO:0044424 | obsolete intracellular part | cellular_component |
GO:0044428 | obsolete nuclear part | cellular_component |
GO:0070013 | intracellular organelle lumen | cellular_component |
GO:0044446 | obsolete intracellular organelle part | cellular_component |
GO:0044464 | obsolete cell part | cellular_component |
GO:0005622 | intracellular anatomical structure | cellular_component |
GO:0005623 | obsolete cell | cellular_component |
GO:0005634 | nucleus | cellular_component |
GO:0031974 | membrane-enclosed lumen | cellular_component |
GO:0043226 | organelle | cellular_component |
GO:0043227 | membrane-bounded organelle | cellular_component |
GO:0043228 | non-membrane-bounded organelle | cellular_component |
GO:0043229 | intracellular organelle | cellular_component |
GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
GO:0043232 | intracellular non-membrane-bounded organelle | cellular_component |
GO:0043233 | organelle lumen | cellular_component |
GO:0003676 | nucleic acid binding | molecular_function |
GO:1901363 | heterocyclic compound binding | molecular_function |
GO:0140097 | catalytic activity, acting on DNA | molecular_function |
id | description |
---|---|
ko03050 | Proteasome |
ko03230 | Viral genome structure |
ko05164 | Influenza A |
ko05169 | Epstein-Barr virus infection |
ko05016 | Huntington disease |
ko03200 | Viral proteins |
id | description |
---|---|
ZDB-GENE-030131-1393 | Predicted to enable chromatin binding activity. Predicted to be involved in sister chromatid cohesion. Predicted to be part of cohesin complex. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 47. Orthologous to human STAG1 (stromal antigen 1). |
ensembl_id | ENSDARG00000062137 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00047210 | False | 960 | lncRNA | 0.37 | 2 | 26948712 | 26952044 |
TCONS_00046504 | False | 4970 | mRNA | 0.46 | 34 | 26948712 | 26995164 |
TCONS_00046505 | True | 3771 | mRNA | 0.48 | 33 | 26949664 | 26981848 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_023506 | msl2b | coding | downstream | 3322 | 26941197 ~ 26945390 (-) |
XLOC_023505 | fndc3bb | coding | downstream | 62815 | 26753956 ~ 26885897 (-) |
XLOC_023504 | pld1b | coding | downstream | 233538 | 26659010 ~ 26715174 (-) |
XLOC_023503 | NA | coding | downstream | 300689 | 26641899 ~ 26648023 (-) |
XLOC_023502 | tnikb | coding | downstream | 316530 | 26491904 ~ 26632182 (-) |
XLOC_023508 | zmynd11 | coding | upstream | 228788 | 27223952 ~ 27256673 (-) |
XLOC_023509 | ccl34b.1 | coding | upstream | 401825 | 27396989 ~ 27400630 (-) |
XLOC_023510 | ccl34b.3 | coding | upstream | 412791 | 27407955 ~ 27409599 (-) |
XLOC_023511 | ccl34b.4 | coding | upstream | 421428 | 27416592 ~ 27419198 (-) |
XLOC_023512 | si:dkey-25o1.7 | coding | upstream | 425912 | 27421076 ~ 27423697 (-) |
XLOC_023665 | dre-mir-735 | misc | upstream | 11182797 | 38177961 ~ 38178027 (-) |
XLOC_023496 | NA | non-coding | downstream | 579527 | 26354696 ~ 26369185 (-) |
XLOC_023491 | NA | non-coding | downstream | 712134 | 26232700 ~ 26236578 (-) |
XLOC_023490 | NA | non-coding | downstream | 916441 | 26031248 ~ 26032271 (-) |
XLOC_023487 | NA | non-coding | downstream | 1194566 | 25750636 ~ 25754146 (-) |
XLOC_023517 | NA | non-coding | upstream | 467772 | 27462936 ~ 27463524 (-) |
XLOC_023518 | NA | non-coding | upstream | 468397 | 27463561 ~ 27464451 (-) |
XLOC_023520 | NA | non-coding | upstream | 494651 | 27489815 ~ 27491197 (-) |
XLOC_023521 | NA | non-coding | upstream | 761712 | 27756876 ~ 27776814 (-) |
XLOC_023523 | NA | non-coding | upstream | 913791 | 27908955 ~ 27951204 (-) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|