XLOC_023509 (ccl34b.1)


Basic Information

Item Value
gene id XLOC_023509
gene name ccl34b.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 27396989 ~ 27400630 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046511
CTCACTatttattaagtgtccttaacactatatattaacattttttaagttttgtttataATGCACAACCTCACAATATGGTGCTGGTATAtaaatgcaagagtgtttgggtctttcccagtgttgggttgcggctggaagggcatcagctgagtaagacatatgctggatacgttggcggttcattccactgtgatgacacctgattaaaaaagggactcagccgaaaagagaatgaatcaatgaatgaatgaagacacaGCAGCCAGTTACTTTCAGTTGTCgagtttttgacatttaaaaggtgtgtttgtgtatgaaacGTGCATGTGTAGTCCCAATTTACACTCCGATAAAAGATTTTACAGCCAATTGGTTTACAGAGTTTACTCCAAAGTAAAATAACCAACAAACCAGATGCTAATAATCAAACAGAGTTCAATTTGATATACCTGAATAATTttaagaatgtgtgtgtttacttaatttgttACTGAAAACCGTTTTAAGTTAAGTAGTGGATCCAGTTCTTTACTTTTTTACAATGCAGGATGTCTCTCATGTGATTTCCGCTTTTCTTTCTGCTTATTTACTGCTTAAGTCAAACAAGCCAGAACCTTGAATGCATTTCAGATACCAGAAGTGAAACTGTGACAATGAAAACACAAAAGATCTTCATGAGGAGTTTGGCTGTTGCACTTACTGCATCAGTGATCTGGACTGTTACAGCAGTCGCTGATAATGTGGAATCATGCTGTACCCCAGTCTCCACACCAGAGCTCACCGATCCCATCATGAGTGTGAGGATCCAGTTTGAAAGTCTTGAGTGTGAGACGGCCATCGTCTTCAAGACTGAAGAGCGGGAGTTGTGCTCTGATCCTAGACAACTGTGGGTGAGGAGGAAGGTCATGCAGTTCTACAAAAATAAAGTAACCAAAAAGACCAACTAAATCCTATGTGACTTCCACGataccaccatcatcatcatcattgattaGTAATGAATAACAACTCAGAAAAAGAATAATGTAtcttagaaaaaatatataaatgtgatGTACAATGATGATGTGTGGAGCAACTGCAGCTTGAATCTGCAAATAAAGTATGATCAGCAACAATTGGTTTGGCTTGATGtttctgttttaaaacaatttttatatAGGCTTTTCCGATTGTTCCGAATTTTCCTGTTGTTTACCTCAATTATtcttcctcatgtggttttaaaactatttgagtttccttcttctgtggaacacaaataCAAACTGGTCACACTTCTTTCCTCAGGAAaactttgtatatatttatattatatgtatcatttttttatagtttaatttatttcacaATAAATTTCATTTGTTCTCCTGTGATGGTATGTATGTTTGTACCCAGTTCCTTGTGTGTTTGGGCACACTTGGCAAATAAAACTCATTCTGATTTTTCGGTAGGTAAAAAATTACCATAGAAGTCGATGAGGTG
>TCONS_00046512
GAACCTTGAATGCATTTCAGATACCAGAAGTGAAACTGTGACAATGAAAACACAAAAGATCTTCATGAGGAGTTTGGCTGTTGCACTTACTGCATCAGTGATCTGGACTGTTACAGTCGCTGATAATGTGGAATCATGCTGTACCCCAGTCTCCACACCAGAGCTCACCGATCCCATCATGAGTGTGAGGATCCAGTTTGAAAGTCTTGAGTGTGAGACGGCCATCGTCTTCAAGACTGAAGAGCGGGAGTTGTGCTCTGATCCTAGACAACTGTGGGTGAGGAGGAAGGTCATGCAGTTCTACAAAAATAAAGTAACCAAAAAGACCAACTAAATCCTATGTGACTTCCACGataccaccatcatcatcatcattgattaGTAATGAATAACAACTCAGAAAAAGAATAATGTAtcttagaaaaaatatataaatgtgatGTACAATGATGATGTGTGGAGCAACTGCAGCTTGAATCTGCAAATAAAGTATGATCAGCAAC
>TCONS_00046513
GCATTTCAGATACCAGAAGTGAAACTGTGACAATGAAAACACAAAAGATCTTCATGAGGAGTTTGGCTGTTGCACTTACTGCATCAGTGATCTGGACTGTTACAGCAGTCGCTGATAATGTGGAATCATGCTGTACCCCAGTCTCCACACCAGAGCTCACCGATCCCATCATGAGTGTGAGGATCCAGTTTGAAAGTCTTGAGTGTGAGACGGCCATCGTCTTCAAGACTGAAGAGCGGGAGTTGTGCTCTGATCCTAGACAACTGTGGGTGAGGAGGAAGGTCATGCAGTTCTAGTAAGTGAAAGCAAACACGTTTGATAAAACTACATTTTTCAGAACATAAACTGCTTATAAAGTGTTCAAACATCAGGTGTCCTGCACA

Function

symbol description
ccl34b.1 Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Predicted to be active in extracellular space.

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0002548 monocyte chemotaxis biological_process
GO:0006954 inflammatory response biological_process
GO:0006955 immune response biological_process
GO:0071346 cellular response to interferon-gamma biological_process
GO:0071347 cellular response to interleukin-1 biological_process
GO:0071356 cellular response to tumor necrosis factor biological_process
GO:0048247 lymphocyte chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0048020 CCR chemokine receptor binding molecular_function
GO:0008009 chemokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-276 Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Predicted to be active in extracellular space.

Ensembl:

ensembl_id ENSDARG00000093608

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046511 False 1488 mRNA 0.36 4 27396989 27400630
TCONS_00046512 False 503 mRNA 0.41 4 27397358 27400017
TCONS_00046513 True 383 lncRNA 0.44 3 27399460 27400006

Neighbor

gene id symbol gene type direction distance location
XLOC_023508 zmynd11 coding downstream 140316 27223952 ~ 27256673 (-)
XLOC_023507 NA coding downstream 401825 26948712 ~ 26995164 (-)
XLOC_023506 msl2b coding downstream 451599 26941197 ~ 26945390 (-)
XLOC_023505 fndc3bb coding downstream 511092 26753956 ~ 26885897 (-)
XLOC_023504 pld1b coding downstream 681815 26659010 ~ 26715174 (-)
XLOC_023510 ccl34b.3 coding upstream 7325 27407955 ~ 27409599 (-)
XLOC_023511 ccl34b.4 coding upstream 15962 27416592 ~ 27419198 (-)
XLOC_023512 si:dkey-25o1.7 coding upstream 20446 27421076 ~ 27423697 (-)
XLOC_023513 CR383669.2 coding upstream 27511 27428141 ~ 27430612 (-)
XLOC_023514 si:dkey-25o1.7 coding upstream 34246 27434876 ~ 27436319 (-)
XLOC_023665 dre-mir-735 misc upstream 10777331 38177961 ~ 38178027 (-)
XLOC_023503 NA non-coding downstream 748966 26641899 ~ 26648023 (-)
XLOC_023496 NA non-coding downstream 1027804 26354696 ~ 26369185 (-)
XLOC_023491 NA non-coding downstream 1160411 26232700 ~ 26236578 (-)
XLOC_023490 NA non-coding downstream 1364718 26031248 ~ 26032271 (-)
XLOC_023517 NA non-coding upstream 62306 27462936 ~ 27463524 (-)
XLOC_023518 NA non-coding upstream 62931 27463561 ~ 27464451 (-)
XLOC_023520 NA non-coding upstream 89185 27489815 ~ 27491197 (-)
XLOC_023521 NA non-coding upstream 356246 27756876 ~ 27776814 (-)
XLOC_023523 NA non-coding upstream 508325 27908955 ~ 27951204 (-)

Expression


Co-expression Network