XLOC_023512 (si:dkey-25o1.7)


Basic Information

Item Value
gene id XLOC_023512
gene name si:dkey-25o1.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 27421076 ~ 27423697 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046516
GCAGCGTCTTCACAACAAACTAGTCTGAAGACTTCTTCCTCTTGTCTTTATCTTGGTATTTTTCACAAAACATGATGAATATTTGTTAAAGTTAGCTCTGATGATGATGACAGTTCTTGTTACATCACAGAAAGCTTCAGTCTTTACAAATGCCTTTGAGGAAAGGGGAAATAATTGTCTCCACAGTAGTGGTGACTGATCCTATCATCAGTGTAAGGATACAACCTGAAAGTATTCCATGTGTGAAGGCCATCATTTTTGAGACTGATCGAGGGCATTTCTGCTCTGATCCCAGACAACCATGGGTGCGAAGAAAAGTTCTGCAGTTTTTcagaacTTTAAAAAAGACATTCAACTGACATTTGCACCACGATCATCCATTAGTAAGTGAACTAATGTGGAAGGATCTGCTTAAGCTTCAGACATATCATGGATCATAAATGTCTAAAAGTAAACTCAATATGAAATCAACAAATCTCGTagaaagtatttttaaaaccatttttaaacttttgcttttgtataatggaAATATTTACATGATTTACATTAAATATAGTATATTGTAAATTACATTGAAGATACAGAGCAAGCTGACAGTGATGAATCTTAAACTGAGCTACACTAAAACAAATTGTTAGCTTAGATTATAATGTATTTCACATTGAAAAATAGTTAATTCACATCACTGCTAGTAGACAGTTGACTGATAGAAGTACTGATAAAAGTCTGAGTGAATTGCAGATTGATTTATATGAATTTCTTTGTCAGTGTATGATGCAAATCAACTGAAATCTGAAACTGGAAATAAATTGTGATCAGCAACTACTGTTTGCTTGTGGTCGATGTTTCTGAATGTGTTAACGATGTTCTTCCTTTGCATAAAGacaccttttcttttttttctattttttttttttacttttctttgtaACTGGTTTCTGGCTGTGTAATATTTGCTACAGAAGTACATTTCATCCATAATCAAATTATGTTGCTAAATAAATTTGTTCgtcttttttt
>TCONS_00046517
GTCTCCACAGTAGTGGTGACTGATCCTATCATCAGTGTAAGGATACAACCTGAAAGTATTCCATGTGTGAAGGCCATCATTTTTGAGACTGATCGAGGGCATTTCTGCTCTGATCCCAGACAACCATGGGTGCGAAGAAAAGTTCTGCAGTTTTTcagaacTTTAAAAAAGACATTCAACTGACATTTGCACCACGATCATCCATTAGTAAGTGAACTAATGTGGAAGGATCTGCTTAAGCTTCAGACATATCATGGATCATAAATGTCTAAAAGTAAACTCAATATGAAATCAACAAATCTCGTagaaagtatttttaaaaccatttttaaacttttgcttttgtataatggaAATATTTACATGATTTACATTAAATATAGTATATTGTAAATTACATTGAAGATACAGAGCAAGCTGACAGTGATGAATC

Function

symbol description
si:dkey-25o1.7 Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Predicted to be active in extracellular space.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000093570

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046516 False 1023 mRNA 0.33 4 27421076 27423697
TCONS_00046517 True 433 mRNA 0.34 3 27421490 27422270

Neighbor

gene id symbol gene type direction distance location
XLOC_023511 ccl34b.4 coding downstream 1878 27416592 ~ 27419198 (-)
XLOC_023510 ccl34b.3 coding downstream 11477 27407955 ~ 27409599 (-)
XLOC_023509 ccl34b.1 coding downstream 20446 27396989 ~ 27400630 (-)
XLOC_023508 zmynd11 coding downstream 164403 27223952 ~ 27256673 (-)
XLOC_023507 NA coding downstream 425912 26948712 ~ 26995164 (-)
XLOC_023513 CR383669.2 coding upstream 4444 27428141 ~ 27430612 (-)
XLOC_023514 si:dkey-25o1.7 coding upstream 11179 27434876 ~ 27436319 (-)
XLOC_023515 ccl34b.8 coding upstream 26388 27450085 ~ 27452488 (-)
XLOC_023516 ccl34b.9 coding upstream 35907 27459604 ~ 27461295 (-)
XLOC_023517 NA coding upstream 39239 27462936 ~ 27463524 (-)
XLOC_023665 dre-mir-735 misc upstream 10754264 38177961 ~ 38178027 (-)
XLOC_023503 NA non-coding downstream 773053 26641899 ~ 26648023 (-)
XLOC_023496 NA non-coding downstream 1051891 26354696 ~ 26369185 (-)
XLOC_023491 NA non-coding downstream 1184498 26232700 ~ 26236578 (-)
XLOC_023490 NA non-coding downstream 1388805 26031248 ~ 26032271 (-)
XLOC_023518 NA non-coding upstream 39864 27463561 ~ 27464451 (-)
XLOC_023520 NA non-coding upstream 66118 27489815 ~ 27491197 (-)
XLOC_023521 NA non-coding upstream 333179 27756876 ~ 27776814 (-)
XLOC_023523 NA non-coding upstream 485258 27908955 ~ 27951204 (-)

Expression


Co-expression Network