G435246 (LOC106613930)


Basic Information

Item Value
gene id G435246
gene name LOC106613930
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71006234 ~ 71010603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU492787
AATGTTACGTTTAAGCATGTCCTCTGTCTCACCTTTGGGTTGGTGTCCTGTGCCTCCTCGTTGTGGGAGAGTCGGACAACCTTCCCAGATGTGTTGAGACTGACAAACACCTGTAGACACGGGTACTTGGAGCTTTTCCAGCACTCGGAGCCGCAGCTGTAGGTACAGTTAATCTCCGCCACGATGGTGGAGTTGAGCACAGCGCAGCTGGATTCCTCTGTCCACACACTGTCTGAGTAGGAGCGCACCATGGTGATGCCCAGCACAAAGTACATCATCACAGAGAAAAGGATCATGCTGAGTCCGAGGAGAATAGCTCTGTCTTCCCCAGCCTTCAGTGCTGTCACTGTCTTCCTCTTGTCTAGCACGTCATACTCCCGAACCTTCTGATAAATAGTcCTTCTCTCACCTCCTGATCCCTGAGCTCCTTTACTTCCTGTCCAGAGAAACATCCTCCCTGAGGACTCTCTGTGCCCGCCACCACTCACAGAGGGCGTCACACAGGGTTGCTGAGACCACCTTCCaaaggacagacacacacacactcagtgacCCATATGCCCCTCAGTCTCCACACGCCTGTCCTGACAGTGCCACCCCCACAGAGCCTGGTCAGGACACCCCACAGCCAAGTGACAAGAGTTTTCTCACTGAAGGACTAAATCAATTCCATTCAACTTCTGCAGAAAGGAAAAGCCACTTTCCCACAGAGTTCAGAGCCACTCGCCATCCACTGGGATAATCACCGTCCCACTGGGATAAGTGAAGGTAGAAATAATCCTTGGACTGTTTGAAGAGCTGG

Function

NR:

description
calcium-activated potassium channel subunit beta-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU492787 True 802 lncRNA 0.52 3 71006234 71010603

Neighbor

gene id symbol gene type direction distance location
LOC110524463 tbl1xr1 coding downstream 135837 70836815 ~ 70870397 (-)
LOC110524459 spata16 coding downstream 1001517 69950204 ~ 70004717 (-)
LOC110522884 LOC106604339 coding downstream 1085140 69920157 ~ 69921094 (-)
LOC110524457 LOC106584309 coding downstream 1172083 69825310 ~ 69834151 (-)
LOC110524454 rfc4 coding downstream 1254786 69744586 ~ 69751448 (-)
LOC110524467 zmat3 coding upstream 11069 71021672 ~ 71033577 (-)
LOC110524468 LOC106613935 coding upstream 35439 71046042 ~ 71057781 (-)
LOC110524470 LOC106613933 coding upstream 58762 71069365 ~ 71106201 (-)
LOC110524473 LOC106613938 coding upstream 152716 71163319 ~ 71177625 (-)
LOC110524474 LOC106613939 coding upstream 184171 71194774 ~ 71199198 (-)
G435244 NA non-coding downstream 1765 71004249 ~ 71004469 (-)
G435243 NA non-coding downstream 2286 71003677 ~ 71003948 (-)
G435240 NA non-coding downstream 7142 70998782 ~ 70999092 (-)
G435237 NA non-coding downstream 11386 70994594 ~ 70994848 (-)
G435236 NA non-coding downstream 11781 70994222 ~ 70994453 (-)
G435182 NA non-coding upstream 6801 71017404 ~ 71019623 (-)
G435177 NA non-coding upstream 55937 71066540 ~ 71067820 (-)
G435282 ycu9 non-coding upstream 102196 71112799 ~ 71114579 (-)
G435280 impact non-coding upstream 104669 71115272 ~ 71126065 (-)
G435283 NA non-coding upstream 105231 71115834 ~ 71116092 (-)
G435234 NA other downstream 14436 70990892 ~ 70991798 (-)
G433683 LOC106613912 other downstream 1481444 69486406 ~ 69524790 (-)
G432513 NA other downstream 2000128 69004619 ~ 69006106 (-)
G432338 NA other downstream 2251177 68748558 ~ 68755057 (-)
G432310 LOC106613894 other downstream 2298786 68699821 ~ 68707448 (-)
G435176 NA other upstream 57422 71068025 ~ 71068887 (-)
LOC110524478 LOC106613944 other upstream 218579 71226012 ~ 71242283 (-)
il23r LOC106613945 other upstream 275787 71285725 ~ 71308015 (-)
G436172 LOC100136696 other upstream 1030359 72040962 ~ 72121697 (-)
G436830 LOC106605384 other upstream 1577681 72588284 ~ 72588576 (-)

Expression


Co-expression Network