G435182


Basic Information

Item Value
gene id G435182
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71017404 ~ 71019623 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU492706
TTTTCTATTTATGAGTCTGTTTTTACAGACAATTagctgtataaaaaaatatactgTTATCTAATGTAGTTGAGCTTCATGTGCAACATCACTTTATTTGTACACAAATTATTATGTTATAATATTTCGCTGTAAAAATTATGTTTGAAATTTACATTTGTGCATGATATTAttagaatataaatatatttaattatTCAGAATATCCTACTAGTGGGAGTGTAGGAACTAGGCCCATTTTCCAGAGAAAGAGACGGGACCATTATATTGGACACAAAGTACTGAATGGGAATGAGTTACATTAGTATTGCACTTGTTGTTATAGAGGAGATGGTGGAGTTTTATACTGATTTGCTTTGATTAATGTTATTTGTTGAAGTTCTATTGATGCGTCTCGATCTGATTCATACCAAATGTTTACAGAGAGTGGTCTAAAGGGAAGTCGATCACATTTAATGTTGGATCCATCCAGGGCCAGGTCTAGGGGCCCTAAGCGTGATTTGGTTGGGGGCCCCCCTATCTCTTGCCAACAAATTTTAGTGGCCCCCCTCTTGAGGGTggagaaaaaaagtgttaaagttcatttcctgctattctacatattttgccatggggtgtagagataatgttgcagttttaaagcaagtttactgcaattctactcattttgccatggggtggagagaatgttttgctgttttaaagctaatttcctgcaattctacatattttgccatgacTTGTGCCATGTTAATATATCTGAGTGataatgactaacaaaatcaatgggggccccttGGAGTTCAGGGCCCCTGGACACGTGCCCTGCATCCCAGTCGGTATTAGGCCatgatagctggctagactaactaccaatctaaAAACTGTCAGCTAACATGtctaattgagtgactgacataacaagagaaaaacgtCTGATGCACAATCAaatttctaaattgcacctgattctactattcttactcttcaaatcaaatttcacCTGCGTCgtaaacaacagtgaaatgcttacttacgggtccttttccaacaatgcagagtaatCTTCCAGTCATCTTAAATCCACTTTTTTCAAATGCTGCTTTAATACATATTCAGTGCCTCTGAACATGACTTTTGTGATGGACTGCAGCCAGGGCTGTGTTTTTCTTGGGAGTTCAAACCAATGTAATTAAATGGGCTGCATTGATCATGTTACACATGAAGTGATCTACTTCATCTGGTTCATCGCTCAATTTAACCACCCAGAGCAAGGAAGCCTTTTCTATTTGGAACTAGCACAGCAGCTGAATTAACCACTTTCATAATGATACCTTTGAAGTCATAATATTATGCTAGTTTACAATGATGTAACATACCACTTAAAATGGGAGTGTGTATCTCCCAAAACTTCAAGGAAGTTCCTCAGAGTGTATATTGTGGGTCTGAGTGCAATTCATTAGTCTATGTGAGTAGTCATATCTCATTCAATGCCCTATTTCTGTTATAGTAAGTGGAGTTGTGTTTGACTGCTGCTACACATCCATCCATGCTAGACTGTGTTGGCTATGCTAGTAGCTGTAGCTGTGCAGGCTCTGCTCTGTCCTCTGTGGCGTGAGTCAGGAGCCATTCCTTGCtgggtgtagtgtagtgctgcAGCAGCACATCTGTTTGCCGCTCTATCAGGAAGTGGTGACCCGGCATGGGAACTTACCCCAGGGAGATCCACACAGGCACAACAAACACTCTCCAAATGGAGCTCTGTGTATTCAGGCCATTATggatatcctcctctcctcagctacGTATGGCTGGCTCTGAGTTTGGCTCTTTATCTGCTGCTCAGAAATATCACCTCTCTAAGATAGATGGTTTTATAAATGTCAGAGATAGTAAACTATATCTAGGGATAAGGGAATAAAATAAGTGTTAGCTGCAGTGCCTTTCTAATGCCACACAATTTCATATCATGGCTGCCTTGGGCGCAAACATGATTCTTCAGAACAATCGACTTAATTTCCATTGGAGGAAGAAATATCGCTGCTGGTGCAATATGGACAATATGTGATTCTAAGGCACCAATTCATTTGGATTGACTTCCCTTTAGAGAAAATAATTGTATAACGTATTGAATGTATGTATATTTGAAGAATAACAGAATGAAAACAGTTGTTTTAGAAACTATTGGAACACTTATTTTAGTCACTGTACAATATTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU492706 True 2220 lncRNA 0.39 1 71017404 71019623

Neighbor

gene id symbol gene type direction distance location
LOC110524463 tbl1xr1 coding downstream 147007 70836815 ~ 70870397 (-)
LOC110524459 spata16 coding downstream 1012687 69950204 ~ 70004717 (-)
LOC110522884 LOC106604339 coding downstream 1096310 69920157 ~ 69921094 (-)
LOC110524457 LOC106584309 coding downstream 1183253 69825310 ~ 69834151 (-)
LOC110524454 rfc4 coding downstream 1265956 69744586 ~ 69751448 (-)
LOC110524467 zmat3 coding upstream 2049 71021672 ~ 71033577 (-)
LOC110524468 LOC106613935 coding upstream 26419 71046042 ~ 71057781 (-)
LOC110524470 LOC106613933 coding upstream 49742 71069365 ~ 71106201 (-)
LOC110524473 LOC106613938 coding upstream 143696 71163319 ~ 71177625 (-)
LOC110524474 LOC106613939 coding upstream 175151 71194774 ~ 71199198 (-)
G435246 LOC106613930 non-coding downstream 6801 71006234 ~ 71010603 (-)
G435244 NA non-coding downstream 12935 71004249 ~ 71004469 (-)
G435243 NA non-coding downstream 13456 71003677 ~ 71003948 (-)
G435240 NA non-coding downstream 18312 70998782 ~ 70999092 (-)
G435237 NA non-coding downstream 22556 70994594 ~ 70994848 (-)
G435177 NA non-coding upstream 46917 71066540 ~ 71067820 (-)
G435282 ycu9 non-coding upstream 93176 71112799 ~ 71114579 (-)
G435280 impact non-coding upstream 95649 71115272 ~ 71126065 (-)
G435283 NA non-coding upstream 96211 71115834 ~ 71116092 (-)
G435291 NA non-coding upstream 111855 71131478 ~ 71131685 (-)
G435234 NA other downstream 25606 70990892 ~ 70991798 (-)
G433683 LOC106613912 other downstream 1492614 69486406 ~ 69524790 (-)
G432513 NA other downstream 2011298 69004619 ~ 69006106 (-)
G432338 NA other downstream 2262347 68748558 ~ 68755057 (-)
G432310 LOC106613894 other downstream 2309956 68699821 ~ 68707448 (-)
G435176 NA other upstream 48402 71068025 ~ 71068887 (-)
LOC110524478 LOC106613944 other upstream 209559 71226012 ~ 71242283 (-)
il23r LOC106613945 other upstream 266767 71285725 ~ 71308015 (-)
G436172 LOC100136696 other upstream 1021339 72040962 ~ 72121697 (-)
G436830 LOC106605384 other upstream 1568661 72588284 ~ 72588576 (-)

Expression


Co-expression Network