G434702


Basic Information

Item Value
gene id G434702
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71017405 ~ 71019437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU492169
CCAATATTGTACAGTGACTAAAATAAGTGTTCCAATAGTTTCTAAAACAACTGTTTTCATTCTGTTATTCTTCAAATATACATACATTCAATACGTTATACAATTATTTTCTCTAAAGGGAAGTCAATCCAAATGAATTGGTGCCTTAGAATCACATATTGTCCATATTGCACCAGCAGCGATATTTCTTCCTCCAATGGAAATTAAGTCGATTGTTCTGAAGAATCATGTTTGCGCCCAAGGCAGCCATGATATGAAATTGTGTGGCATTAGAAAGGCACTGCAGCTAACACTTATTTTATTCCCTTATCCCTAGATATAGTTTACTATCTCTGACATTTATAAAACCATCTATCTTAGAGAGGTGATATTTCTGAGCAGCAGATAAAGAGCCAAACTCAGAGCCAGCCATACgtagctgaggagaggaggatatccATAATGGCCTGAATACACAGAGCTCCATTTGGAGAGTGTTTGTTGTGCCTGTGTGGATCTCCCTGGGGTAAGTTCCCATGCCGGGTCACCACTTCCTGATAGAGCGGCAAACAGATGTGCTGCTgcagcactacactacacccaGCAAGGAATGGCTCCTGACTCACGCCACAGAGGACAGAGCAGAGCCTGCACAGCTACAGCTACTAGCATAGCCAACACAGTCTAGCATGGATGGATGTGTAGCAGCAGTCAAACACAACTCCACTTACTATAACAGAAATAGGGCATTGAATGAGATATGACTACTCACATAGACTAATGAATTGCACTCAGACCCACAATATACACTCTGAGGAACTTCCTTGAAGTTTTGGGAGATACACACTCCCATTTTAAGTGGTATGTTACATCATTGTAAACTAGCATAATATTATGACTTCAAAGGTATCATTATGAAAGTGGTTAATTCAGCTGCTGTGCTAGTTCCAAATAGAAAAGGCTTCCTTGCTCTGGGTGGTTAAATTGAGCGATGAACCAGATGAAGTAGATCACTTCATGTGTAACATGATCAATGCAGCCCATTTAATTACATTGGTTTGAACTCCCAAGAAAAACACAGCCCTGGCTGCAGTCCATCACAAAAGTCATGTTCAGAGGCACTGAATATGTATTAAAGCAGCATTTGAAAAAAGTGGATTTAAGATGACTGGAAGattactctgcattgttggaaaaggacccgtaagtaagcatttcactgttgtttacGACGCAGgtgaaatttgatttgaagagtaagaatagtagaatcaggtgcaatttagaaattTGATTGTGCATCAGacgtttttctcttgttatgtcagtcactcaattagaCATGTTAGCTGACAGTTTttagattggtagttagtctagccagctatcatGGCCTAATACCGACTGGGATGCAGGGCACGTGTCCAGGGGCCCTGAACTCCaaggggcccccattgattttgttagtcattatCACTCAGATATATTAACATGGCACAAgtcatggcaaaatatgtagaattgcaggaaattagctttaaaacagcaaaacattctctccaccccatggcaaaatgagtagaattgcagtaaacttgctttaaaactgcaacattatctctacaccccatggcaaaatatgtagaatagcaggaaatgaactttaacactttttttctccACCCTCAAGAGGGGGGCCACTAAAATTTGTTGGCAAGAGATAGGGGGGCCCCCAACCAAATCACGCTTAGGGCCCCTAGACCTGGCCCTGGATGGATCCAACATTAAATGTGATCGACTTCCCTTTAGACCACTCTCTGTAAACATTTGGTATGAATCAGATCGAGACGCATCAATAGAACTTCAACAAATAACATTAATCAAAGCAAATCAGTATAAAACTCCACCATCTCCTCTATAACAACAAGTGCAATACTAATGTAACTCATTCCCATTCAGTACTTTGTGTCCAATATAATGGTCCCGTCTCTTTCTCTGGAAAATGGGCCTAGTTCCTACACTCCCACTAGTAGGATATTCTGAataattaaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU492169 True 2033 lncRNA 0.40 1 71017405 71019437

Neighbor

gene id symbol gene type direction distance location
si:ch211-247n2.1 LOC106613930 coding upstream 4924 70982057 ~ 71012481 (+)
si:ch211-51h4.2 LOC106613927 coding upstream 180579 70739208 ~ 70836826 (+)
LOC110524461 naaladl2 coding upstream 279060 70455465 ~ 70738345 (+)
nlgn1 nlgn1 coding upstream 669075 70065855 ~ 70348330 (+)
ect2 ect2 coding upstream 1109842 69871717 ~ 69907563 (+)
pik3ca pik3ca coding downstream 14583 71034020 ~ 71045983 (+)
lamp3 lamp3 coding downstream 30619 71050056 ~ 71053212 (+)
LOC110524466 LOC106613934 coding downstream 36132 71055569 ~ 71065158 (+)
impact ycu9 coding downstream 87658 71107095 ~ 71130228 (+)
LOC110524471 LOC106613937 coding downstream 120333 71139770 ~ 71150100 (+)
G434692 NA non-coding upstream 17323 70999806 ~ 71000082 (+)
G434679 NA non-coding upstream 23065 70993634 ~ 70994340 (+)
G434677 NA non-coding upstream 24240 70992537 ~ 70993165 (+)
G434674 NA non-coding upstream 31296 70985752 ~ 70986109 (+)
G434664 NA non-coding upstream 45397 70971287 ~ 70972008 (+)
G434682 NA non-coding downstream 46063 71065500 ~ 71066082 (+)
G434685 NA non-coding downstream 47098 71066535 ~ 71067883 (+)
G434747 NA non-coding downstream 130979 71150416 ~ 71151014 (+)
G434754 NA non-coding downstream 142512 71161949 ~ 71162234 (+)
G434759 NA non-coding downstream 148164 71167601 ~ 71206727 (+)
G434653 NA other upstream 57473 70959610 ~ 70959932 (+)
LOC110524423 LOC106613476 other upstream 2803301 68212224 ~ 68214236 (+)
G430796 LOC106613888 other upstream 2913871 68103179 ~ 68103534 (+)
LOC110524407 LOC106613876 other upstream 3553082 67458540 ~ 67464323 (+)
G429156 NA other upstream 3969241 66981949 ~ 67048164 (+)
G434792 LOC106613943 other downstream 199352 71218789 ~ 71223578 (+)
G434829 NA other downstream 279178 71298615 ~ 71298900 (+)
ralgps2 LOC106613957 other downstream 656434 71552653 ~ 71687963 (+)
G436403 NA other downstream 1484023 72503460 ~ 72504435 (+)
G436588 NA other downstream 1976062 72995499 ~ 72995735 (+)

Expression


Co-expression Network