G434685


Basic Information

Item Value
gene id G434685
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71066535 ~ 71067883 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU492151
TACAtgctttttaaaaacatttattccATAAATAGAATTTGCTTTAAACATCAACCATTTCACTGACAGGAGTACAATAACATACCTTTTTTCTTCAATGAACATGATCAAGAGAAACAAACGGCTGACTTTACATCAGTGTCCTTGTAGAGATGTATCCATATTGCCTTCATAAACTGATTGAGATTGTCACATTTCAATCTGAACAAGATGCTGCATTTATATCAAAACTGAGTAGCAAACAAGTACAATCCATCAGATATGACCAATGCTGACCATGATCAATAGTAGTGCCAGATATAATTACGAATATTGGTACCATGCAAATAAATAGCAAGCTCCACTGACTTCTTGGACAAGTGTCTCCCATTTCAAGCTACTGAGAGGTATGTAACGGCTAAAAATAGTAACCATATAAAATCCCATGATTATGTATCTCGGCAATATTCTGATAAATATGTATGCTGATGTGCATAATGTCACTGTCATTGATAGCAAGTTTAAAATGGTTGTCTCAATGACCCTCTTGACTCAGACATTTCCATTATTGTGGGCTAAAAGGCCCCAAAAGCTAAAGAGGATACAGAGAGCAAAAGCAGTTGCATTCAGTCCGTGAGGTTCTCTCGCCTGCCCTATTACCAGTAATATGATGGAAATGTATACAAACATTAACAAGTGGTTAGTAAGAGAGGGGGAAAAGACTAACAAATTAAAGAAAAACATGATTCAAATGATAGGCAATGATTAGTGAAAGGCAAACAGAAACAATTTGTGGCTTTGAAAACAACTAGATTTGAAAGCTATTTCATGTCATCCTGGCAGCTATTTCATATCTGGGTTGTTCCACGAAAAGAGTACCTTTTGTGACCCTTTGATATtctaagtagaaattgtgcaccaatattaaATTCTAAAGCCTAtaatattaaatgaagtgccctttaatatagaccacatgtaAAATTCTATAAAATCAGATTGC
>TU492152
TACAtgctttttaaaaacatttattccATAAATAGAATTTGCTTTAAACATCAACCATTTCACTGACAGGAGTACAATAACATACCTTTTTTCTTCAATGAACATGATCAAGAGAAACAAACGGCTGACTTTACATCAGTGTCCTTGTAGAGATGTATCCATATTGCCTTCATAAACTGATTGAGATTGTCACATTTCAATCTGAACAAGATGCTGCATTTATATCAAAACTGAGTAGCAAACAAGTACAATCCATCAGATATGACCAATGCTGACCATGATCAATAGTAGTGCCAGATATAATTACGAATATTGGTACCATGCAAATAAATAGCAAGCTCCACTGACTTCTTGGACAAGTGTCTCCCATTTCAAGCTACTGAGAGGTATGTAACGGCTAAAAATAGTAACCATATAAAATCCCATGATTATGTATCTCGGCAATATTCTGATAAATATGTATGCTGATGTGCATAATGTCACTGTCATTGATAGCAAGTTTAAAATGGTTGTCTCAATGACCCTCTTGACTCAGACATTTCCATTATTGTGGGCTAAAAGGCCCCAAAAGCTAAAGAGGATACAGAGAGCAAAAGCAGTTGCATTCAGTCCGTGAGGTTCTCTCGCCTGCCCTATTACCAGTAATATGATGGAAATGTATACAAACATTAACAAGTGGTTAGTAAGAGAGGGGGAAAAGACTAACAAATTAAAGAAAAACATGATTCAAATGATAGGCAATGATTAGTGAAAGGCAAACAGAAACAATTTGTGGCTTTGAAAACAACTAGATTTGAAAGCTATTTCATGTCATCCTGGCAGCTATTTCATATCTGGGTTGTTCCACGAAAAGAGTACCTTTTGTGACCCTTTGATATtctaagtagaaattgtgcaccaatattaaATTCTAAAGCCTAtaatattaaatgaagtgccctttaatatagaccacatgtaAAATTCTATAAAATCAGATTGCACCGAAAAtaagcattttgacatgtccctctgcACCCTCTAAGatgattttaacccacttaacctgAATATTTCCCCAAGTtttaccatcattgtaaagccctactTATTTAGTTGCTTTGCATttctaaaaaaatatttattttacgtTATCAGTGATtcattcaaataaaaaataaaaaagtttgagtggattttccctttaatatggtgaaactgttcctttatttttggggggccattatctggtgttttgtggtgaaaACTGAGTGTGTTGAGAATAACACAACCCTGTTATCTGTAGAGATGCTctagaaatgtttatttttatttatgtatatacagtggggcaaaaaaagtatttagtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU492151 False 982 lncRNA 0.35 1 71066535 71067516
TU492152 True 1349 lncRNA 0.34 1 71066535 71067883

Neighbor

gene id symbol gene type direction distance location
LOC110524466 LOC106613934 coding upstream 1377 71055569 ~ 71065158 (+)
lamp3 lamp3 coding upstream 13323 71050056 ~ 71053212 (+)
pik3ca pik3ca coding upstream 20552 71034020 ~ 71045983 (+)
si:ch211-247n2.1 LOC106613930 coding upstream 54054 70982057 ~ 71012481 (+)
si:ch211-51h4.2 LOC106613927 coding upstream 229709 70739208 ~ 70836826 (+)
impact ycu9 coding downstream 39212 71107095 ~ 71130228 (+)
LOC110524471 LOC106613937 coding downstream 71887 71139770 ~ 71150100 (+)
LOC110522992 LOC106613477 coding downstream 241461 71309344 ~ 71324730 (+)
si:dkey-183n20.15 LOC106613949 coding downstream 273619 71341502 ~ 71354918 (+)
LOC110522993 LOC106613952 coding downstream 356488 71424371 ~ 71434943 (+)
G434682 NA non-coding upstream 453 71065500 ~ 71066082 (+)
G434702 NA non-coding upstream 47098 71017405 ~ 71019437 (+)
G434692 NA non-coding upstream 66453 70999806 ~ 71000082 (+)
G434679 NA non-coding upstream 72195 70993634 ~ 70994340 (+)
G434677 NA non-coding upstream 73370 70992537 ~ 70993165 (+)
G434747 NA non-coding downstream 82533 71150416 ~ 71151014 (+)
G434754 NA non-coding downstream 94066 71161949 ~ 71162234 (+)
G434759 NA non-coding downstream 99718 71167601 ~ 71206727 (+)
G434792 LOC106613943 non-coding downstream 150906 71218789 ~ 71223578 (+)
G434796 NA non-coding downstream 156329 71224212 ~ 71224475 (+)
G434653 NA other upstream 106603 70959610 ~ 70959932 (+)
LOC110524423 LOC106613476 other upstream 2852431 68212224 ~ 68214236 (+)
G430796 LOC106613888 other upstream 2963001 68103179 ~ 68103534 (+)
LOC110524407 LOC106613876 other upstream 3602212 67458540 ~ 67464323 (+)
G429156 NA other upstream 4018371 66981949 ~ 67048164 (+)
G434829 NA other downstream 230732 71298615 ~ 71298900 (+)
ralgps2 LOC106613957 other downstream 607988 71552653 ~ 71687963 (+)
G436403 NA other downstream 1435577 72503460 ~ 72504435 (+)
G436588 NA other downstream 1927616 72995499 ~ 72995735 (+)

Expression


Co-expression Network