XLOC_023516 (ccl34b.9)


Basic Information

Item Value
gene id XLOC_023516
gene name ccl34b.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 27459604 ~ 27461295 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046521
TCATGCATCTGTCCACAGCTTCTCATCAATTGATCATTTCATCGGCTTTGCTTTTGCTCCTGTGTGCTTCTGCATCAGGGGATTATTTTATGCCGGTTATGAGTCCTGTTACCCCACCAGAATCCGCTCCTATGGACCTTAGAGGTATGGTTTGCTGCAAGAAATTTACAAGAAAGGAACCACAGATCAAAATAAATAGTTGTTTCTTTGTTCAAGAAATAAGCAACTGTCTTAAGAGTGTGGTATTAATTGATGAAATGAACAAGATGCACTGCATTCATCCTAAAGCTCCATGGCTCAATGCAAGAATAAAGCGTCTAGAAGAGATTGGAGTACAGTGTACAGTACATTAAAAAATAGGAGTGGACATCTTGATCTTCACCTTGCAGCCACACCGGAAAGAAATTTTCATCCAGTCATGTTATACTGTACTACACAATcctgctttaaaatgtaaaaacacacgattctgtatgaaaaaaaatatgcTCAATCTATTGCACAAGCAATGGCTTGCTGCCATGTAGTCTAACTGTGGTTATCACTTTGTCTTGTCttcaaatttttttattgttctttcattattttaatgcattacccAGTTTCATTAAATACTGTTTTTGCTTA

Function

symbol description
ccl34b.9 Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within immune response and response to virus. Predicted to be located in extracellular region. Predicted to be active in extracellular space.

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0002548 monocyte chemotaxis biological_process
GO:0006954 inflammatory response biological_process
GO:0006955 immune response biological_process
GO:0071346 cellular response to interferon-gamma biological_process
GO:0071347 cellular response to interleukin-1 biological_process
GO:0071356 cellular response to tumor necrosis factor biological_process
GO:0009615 response to virus biological_process
GO:0048247 lymphocyte chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0048020 CCR chemokine receptor binding molecular_function
GO:0008009 chemokine activity molecular_function
GO:0031726 CCR1 chemokine receptor binding molecular_function
GO:0031729 CCR4 chemokine receptor binding molecular_function
GO:0031730 CCR5 chemokine receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-99 Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within immune response and response to virus. Predicted to be located in extracellular region. Predicted to be active in extracellular space.

Ensembl:

ensembl_id ENSDARG00000078205

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046521 True 627 mRNA 0.37 5 27459604 27461295

Neighbor

gene id symbol gene type direction distance location
XLOC_023515 ccl34b.8 coding downstream 7116 27450085 ~ 27452488 (-)
XLOC_023514 si:dkey-25o1.7 coding downstream 23285 27434876 ~ 27436319 (-)
XLOC_023513 CR383669.2 coding downstream 28992 27428141 ~ 27430612 (-)
XLOC_023512 si:dkey-25o1.7 coding downstream 35907 27421076 ~ 27423697 (-)
XLOC_023511 ccl34b.4 coding downstream 40406 27416592 ~ 27419198 (-)
XLOC_023517 NA coding upstream 1641 27462936 ~ 27463524 (-)
XLOC_023518 NA coding upstream 2266 27463561 ~ 27464451 (-)
XLOC_023519 cxl34b.11 coding upstream 8802 27470097 ~ 27473771 (-)
XLOC_023520 NA coding upstream 28520 27489815 ~ 27491197 (-)
XLOC_023521 NA coding upstream 295581 27756876 ~ 27776814 (-)
XLOC_023665 dre-mir-735 misc upstream 10716666 38177961 ~ 38178027 (-)
XLOC_023507 NA non-coding downstream 464440 26948712 ~ 26995164 (-)
XLOC_023503 NA non-coding downstream 811581 26641899 ~ 26648023 (-)
XLOC_023496 NA non-coding downstream 1090419 26354696 ~ 26369185 (-)
XLOC_023491 NA non-coding downstream 1223026 26232700 ~ 26236578 (-)
XLOC_023490 NA non-coding downstream 1427333 26031248 ~ 26032271 (-)
XLOC_023523 NA non-coding upstream 447660 27908955 ~ 27951204 (-)

Expression


Co-expression Network