G434792 (LOC106613943)


Basic Information

Item Value
gene id G434792
gene name LOC106613943
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71218789 ~ 71223578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU492264
CTTCaacaattatttttatttcaacaATCTCAAGTTGTTTGCAACAATCTTACAAACAGTACAAAATAATTATTTGAGAAACTGACAGTTTAGTGACAGAAATTTGTAGAAGATGTGGGTATTATCACAGTCATTATTGATCGGCCCATGCACTTACAGTTAGGGTAAATTAGGGAGGCAAAATCTTATTGTATGAATGTTGTCTTGAGGTGACAGGTGCATTTTGGTCAAGTCTGTTGTTAATCTGGTCTGAGGGTTCAAATAATTTGTTTCTCAACCAATAAAATTAATGACCACGAGGTGCAGGACAGTGTGGGCTAATAAGAAATCGGCAAAGGCCCTCTCCTGGGATATGGACAGGAAGTCTCCTTTGTTATCTGGATTGATCTGGATACGCAGGCAGACTCCCAGGATGAAGGCTCCAACACAAGATATGAACCCGGCCAGAAAGCTGTTGAATGGGAAGGTGCCAACCAGCAAGCAGTACAGAAACTGCAATGCACCAGTTAACAAGATGTAGAATAGGTAGGCGTCGACCACTTTCAATTTATTCGATGTTTTGGTCCTGTATTCCTCCAAGAATCGAGAAATAACTGAAATTACCGAGTTAGACATGTTTTCTTATTAACAAAAGCCCCAAAACGTGCACAGAGAATCAGGATGCAAGTCGCTTCCGTCAG
>TU492265
CTTCaacaattatttttatttcaacaATCTCAAGTTGTTTGCAACAATCTTACAAACAGTACAAAATAATTATTTGAGAAACTGACAGTTTAGTGACAGAAATTTGTAGAAGATGTGGGTATTATCACAGTCATTATTGATCGGCCCATGCACTTACAGTTAGGGTAAATTAGGGAGGCAAAATCTTATTGTATGAATGTTGTCTTGAGGTGACAGGTGCATTTTGGTCAAGTCTGTTGTTAATCTGGTCTGAGGGTTCAAATAATTTGTTTCTCAACCAATAAAATTAATGACCACGAGGTGCAGGACAGTGTGGGCTAATAAGAAATCGGCAAAGGCCCTCTCCTGGGATATGGACAGGAAGTCTCCTTTGTTATCTGGATTGATCTGGATACGCAGGCAGACTGTAGGCAGGCCAGAAAAAAAATGGGGATGAAGGCTCCAACACAAGATATGAACCCGGCCAGAAAGCTGTTGAATGGGAAGGTGCCAACCAGCAAGCAGTACAGAAACTGCAATGCACCAGTTAACAAGATGTAGAATAGgtccacagatgacgcaatcacactgcacactgccctaacccatctggacaagaggaatacctatgtaagaacgctgttcatcgactacagctcagcatttaacaccatagtaccctccaaacttgtcattaagctcgagaccctgggtctcgacaccGCCCTGTGCAGCtgtgtcctggactttctgacgggccgcccccaggtggtgagggtaggaaacaacatctctatTCCGCTCAGCcctgtcctgtactccctgttcacccatgaccgggtggcatgcacgcctccaaatcaatcatcaactttgcagacactacagtggtaggcttgattaccaacaacgacgagacgtcctacagggaggaggtgagggccctcatagtgtggtgtcaggaaaataacctcacactcaatgtcaacaaaacaaaggagatgatcgtggacttcaggaaacagtagagggagcacccccctatccacatcgacgggacagtagtggagaaggtggaaagttttaagttcttcggcgtacacatcacggacaaactgaaatggtccacccacacagacagtgtgatgaagaaggcgcaacagcgcatCTTAAACCTCAGGAgaatgaagaaatttggcttgtcaccaaaaacactcacacatttttacagatgcacaattgagagcatcctgtcgggctgtatcaccgcctggtacagcaactgctccgcccacaaccataaggctctccagactgctccgcccacaacgcatcaccgggagcaaactacctgccctccaggacacctacagcacccgatgtcacaggaaggccaaaaagatcatcaaggacaacaaccccttgagtcagtacaggtgcatcaaacatggggccgagagactgaaaaacagcttctatctcaaggccatcagactgttaaacaaccatcactaacattgaatggctgctgacaacacactgactcagatctctagccactttaataattaaattggatgtaataaatgtatcactagtcactttaaacaatgccactttatataatgtttacataccctacattactcatcccatatgtatctactgtactctataccatctactgcatcttgcctatgtcgcacggccatcactcatccatatatttatatgtacatattcttattcattcctttacacttgtataattgttagattacttgttcgatagatattactgttcatTCAGAACTAGAAGCATTTCATTACACTCAcattgacatctgctaaccatgtgtatgtgaccaataacatttttatttgaaGAGGTTGTTTTATGACTGCCAATATTGTGTTGTAATGAACTACTCAATATGAACAAGGATAAATAACTGTAGAGAGATGTGATttgtacacatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU492264 False 680 lncRNA 0.40 3 71218789 71219725
TU492265 True 2042 TUCP 0.44 4 71218789 71223578

Neighbor

gene id symbol gene type direction distance location
LOC110524471 LOC106613937 coding upstream 68689 71139770 ~ 71150100 (+)
impact ycu9 coding upstream 88561 71107095 ~ 71130228 (+)
LOC110524466 LOC106613934 coding upstream 153631 71055569 ~ 71065158 (+)
lamp3 lamp3 coding upstream 165577 71050056 ~ 71053212 (+)
pik3ca pik3ca coding upstream 172806 71034020 ~ 71045983 (+)
LOC110522992 LOC106613477 coding downstream 89619 71309344 ~ 71324730 (+)
si:dkey-183n20.15 LOC106613949 coding downstream 121777 71341502 ~ 71354918 (+)
LOC110522993 LOC106613952 coding downstream 204646 71424371 ~ 71434943 (+)
mmachc mmachc coding downstream 220391 71440116 ~ 71442558 (+)
LOC110524490 LOC106613954 coding downstream 243052 71462777 ~ 71490438 (+)
G434759 NA non-coding upstream 12062 71167601 ~ 71206727 (+)
G434754 NA non-coding upstream 56555 71161949 ~ 71162234 (+)
G434747 NA non-coding upstream 67775 71150416 ~ 71151014 (+)
G434685 NA non-coding upstream 150906 71066535 ~ 71067883 (+)
G434682 NA non-coding upstream 152707 71065500 ~ 71066082 (+)
G434796 NA non-coding downstream 4487 71224212 ~ 71224475 (+)
G434797 NA non-coding downstream 5563 71225288 ~ 71225617 (+)
G434810 NA non-coding downstream 34699 71254424 ~ 71254653 (+)
G434821 i12r2 non-coding downstream 57124 71276849 ~ 71283974 (+)
G434823 NA non-coding downstream 73254 71292979 ~ 71293262 (+)
G434653 NA other upstream 258857 70959610 ~ 70959932 (+)
LOC110524423 LOC106613476 other upstream 3004685 68212224 ~ 68214236 (+)
G430796 LOC106613888 other upstream 3115255 68103179 ~ 68103534 (+)
LOC110524407 LOC106613876 other upstream 3754466 67458540 ~ 67464323 (+)
G429156 NA other upstream 4170625 66981949 ~ 67048164 (+)
G434829 NA other downstream 78890 71298615 ~ 71298900 (+)
ralgps2 LOC106613957 other downstream 456146 71552653 ~ 71687963 (+)
G436403 NA other downstream 1283735 72503460 ~ 72504435 (+)
G436588 NA other downstream 1775774 72995499 ~ 72995735 (+)
G437327 NA other downstream 2236576 73456301 ~ 73495084 (+)

Expression


Co-expression Network