G434840


Basic Information

Item Value
gene id G434840
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71366998 ~ 71370128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU492317
cctcctctctctttgtcaGTGACAAACATACTCTCAGACAGTTCCCTTGACCGTAGGATGAAGTCAACCCTAGACACTGATCCGAAGTCAGTCTTGCATCTTCAGTCCATAATGGTTAAATTGAGGACCCACTGAGGGTAAGCGGATCCTAGATCTTTATCTAATGGCCAACTTGTACCCAGAGCATTATCTCACAGCGTCACACTCACAGTATTTCATAATCTCCCAAAAACCACCCACCCAACCCCACCCCGTaccccaaaaacacacacatgctacaTGTCTGCAGGCACCTAGTGACACAAAGAGGGATTGGACAGAGGTGATGTCATAAGGAAGCAGGAAGTACACATGGGAGCCAGCTGCTCCAATCGTTTCATCCAtcctaaatggtaccctattctctgATTTCCATCTATTTTCATGAAGTCATTTCAGACGCAGTCTCAATTCCATTCACAGAGAAGAGTTCCATTCCATCAGTCTCCAACTGCAAATACACTTCCTGAATAATCTTTATGACATCACTGACTACCCCTCTCAGTCTCATTCTAGGAAGACACCCGGTTGGGTGATAGGACTCAGGTTGCTTGTTGACAAGCACTGGTTAAGAGCAGTACGGTGTGTAGTTTGTTCTACTGGTTTATAGATCATACGAATGAGTTCATCTAGTCAATGGTTAAGACTGGTCAGTCAATCCAGGAAATATGGAGGTTAGTGGACTGTTGCAGTTCTTGTGTGTTGTGAGCAGAGAACATTTAAGTGGAGTACtcagtatatgtactgtatgtaggggAGGACTAAGAGAGTGTCAAATGGAGGGACGGGATCTGTGTTTAAAAGGGGAGGGGGTGTCTGTGTTTGGTAGGAGAAAGTGATGAAGGTCCGATATAAGTGCACTCAACAAGCGGGGAGGCAGACATTTGCTCACACTCATGCACACTGCATCAACACTGCACACACTCCCCTACACACGCAACATGATTAATCGAGTTGCACGACTACAGTGACTGTACAGTCCACAGATAGGACAACACACCCTCatctatttcccccccccccctcacaacACTCATCTCACCAACCTCTGCATCACTCTCTgtcacctcttctccctcctcattGATCGATCATTGGACATTCTAGACTCTTAAGGAAactacagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtagcgcaGGACAGGggcaggacagcagacagtataATCCTCTGCTTTAGTCTAGTTGGTCAGTGGTTCAACCTTCAATCGGCACATAATTCCCCATAAAGGCAAATATCAAAATCAAATTAGACTAGTTCACATGACATTCAACAATAATTTTGGCAAACGTAAGAGTTTTGGGGAGCGTGAGTCGGTGTTGTATGGTATACAGTATGCTGTTAATATGTGTCAGTCCACAGAATCCTGTTCCGTCATtggtccctctctcttcctgttttgcAGCAGGACTGGCACCCCCTTTGTTTCGttatatagatgtgtgtgtgtgtgtgtgtgtatatataaatatatatatgaagtttacatacacttgggttggagtcattaaaactagattttcaaacactccacttcttgttagcaaactatagttttggtaagtcggttaaggactttgtgcatgacaagtaatttttccaacaatcgttaacagacagattatttcaattataagtcactatatcacaattctagtgggtcagaagtttacatacactaagttgactgtgcctttaaacagcttggaagattccagaaaaggatgtcatggttttagaagcttctgataggctaattgacatctcttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagatatcagccaagacctcagaaaaaaaaattgtagacctccacaagtctggttcatccttgggagcaatttccaaacgcctgaaggtaccatgttcaactgttaaaacaatagtacgcaagtataaacaccatgggacgacatagccgtcataccgctcaggaaggagacgtgttctgtctcctagagatgaacgtactttggtgcgaaaagtgcaaatcaatcccagaacagcagcaaaggaccttgtgaagatgctggaggaaacaggtacaaaagtatctatatccacagtaaaacaagtcctatatcggcataacctgaaaggacgctcagcaaggaagaagccaatgctccaaaaccaccataaaagagccagactacagtttgcaactgcacatggggacaaagatcatacttttttgaagaagaaatgccttctggtctgatgaaacaaaaatagaactgtttggccataatgaccatcgttatgtttggaggaaaaagggggaggcttgcaagccgaagaacaccatcccaacagtgaagcacgggggtggcagcctcatgttgtggagctgctttgctgcaggagggactggtgcccttcacaaaatagatggcgtcatgagaaaggataattatgtggatatattgaagcaacatcaagacatcagtcgggaagttaaagcttggtcgcaaatgggttttccaaaaggacaatgaccccaagcatacttccaacgttgtggagaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagccctgacctcaatcccatagaaaatgtgggcagaactgaaaaagagggTGCGAgaaaagaggcctacaaacctgacttatttacaccagctctgtcaggaggaatgggcagaaattcacccaacttattgtgggaagcttgtggaaggctaaccgaaacgtttgacccaagttaaacaatttaaaggcaatgctaccaaataccaattgagtgtacataaacttctgacccactgggaatgtgatgaaagaaacaaaagctgaaataaatcactctctctattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaaaacagggatttttttaccaggattacatgtcaggaattgtgaaa
>TU492319
cctcctctctctttgtcaGTGACAAACATACTCTCAGACAGTTCCCTTGACCGTAGGATGAAGTCAACCCTAGACACTGATCCGAAGTCAGTCTTGCATCTTCAGTCCATAATGGTTAAATTGAGGACCCACTGAGGGTAAGCGGATCCTAGATCTTTATCTAATGGCCAACTTGTACCCAGAGCATTATCTCACAGCGTCACACTCACAGTATTTCATAATCTCCCAAAAACCACCCACCCAACCCCACCCCGTaccccaaaaacacacacatgctacaTGTCTGCAGGCACCTAGTGACACAAAGAGGGATTGGACAGAGGTGATGTCATAAGGAAGCAGGAAGTACACATGGGAGCCAGCTGCTCCAATCGTTTCATCCAtcctaaatggtaccctattctctgATTTCCATCTATTTTCATGAAGTCATTTCAGACGCAGTCTCAATTCCATTCACAGAGAAGAGTTCCATTCCATCAGTCTCCAACTGCAAATACACTTCCTGAATAATCTTTATGACATCACTGACTACCCCTCTCAGTCTCATTCTAGGAAGACACCCGGTTGGGTGATAGGACTCAGGTTGCTTGTTGACAAGCACTGGTTAAGAGCAGTACGGTGTGTAGTTTGTTCTACTGGTTTATAGATCATACGAATGAGTTCATCTAGTCAATGGTTAAGACTGGTCAGTCAATCCAGGAAATATGGAGGTTAGTGGACTGTTGCAGTTCTTGTGTGTTGTGAGCAGAGAACATTTAAGTGGAGTACtcagtatatgtactgtatgtaggggAGGACTAAGAGAGTGTCAAATGGAGGGACGGGATCTGTGTTTAAAAGGGGAGGGGGTGTCTGTGTTTGGTAGGAGAAAGTGATGAAGGTCCGATATAAGTGCACTCAACAAGCGGGGAGGCAGACATTTGCTCACACTCATGCACACTGCATCAACACTGCACACACTCCCCTACACACGCAACATGATTAATCGAGTTGCACGACTACAGTGACTGTACAGTCCACAGATAGGACAACACACCCTCatctatttcccccccccccctcacaacACTCATCTCACCAACCTCTGCATCACTCTCTgtcacctcttctccctcctcattGATCGATCATTGGACATTCTAGACTCTTAAGGAAactacagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtagcgcaGGACAGGggcaggacagcagacagtataATCCTCTGCTTTAGTCTAGTTGGTCAGTGGTTCAACCTTCAATCGGCACATAATTCCCCATAAAGGCAAATATCAAAATCAAATTAGACTAGTTCACATGACATTCAACAATAATTTTGGCAAACGTAAGAGTTTTGGGGAGCGTGAGTCGGTGTTGTATGGTATACAGTATGCTGTTAATATGTGTCAGTCCACAGAATCCTGTTCCGTCATtggtccctctctcttcctgttttgcAGCAGGACTGGCACCCCCTTTGTTTCGttatatagatgtgtgtgtgtgtgtgtgtgtgtgtatatataaatatatatatgaagtttacatacacttgggttggagtcattaaaactagattttcaaacactccacttcttgttagcaaactatagttttggtaagtcggttaaggactttgtgcatgacaagtaatttttccaacaatcgttaacagacagattatttcaattataagtcactatatcacaattctagtgggtcagaagtttacatacactaagttgactgtgcctttaaacagcttggaagattccagaaaaggatgtcatggttttagaagcttctgataggctaattgacatctcttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagatatcagccaagacctcagaaaaaaaaattgtagacctccacaagtctggttcatccttgggagcaatttccaaacgcctgaaggtaccatgttcaactgttaaaacaatagtacgcaagtataaacaccatgggacgacatagccgtcataccgctcaggaaggagacgtgttctgtctcctagagatgaacgtactttggtgcgaaaagtgcaaatcaatcccagaacagcagcaaaggaccttgtgaagatgctggaggaaacaggtacaaaagtatctatatccacagtaaaacaagtcctatatcggcataacctgaaaggacgctcagcaaggaagaagccaatgctccaaaaccaccataaaagagccagactacagtttgcaactgcacatggggacaaagatcatacttttttgaagaagaaatgccttctggtctgatgaaacaaaaatagaactgtttggccataatgaccatcgttatgtttggaggaaaaagggggaggcttgcaagccgaagaacaccatcccaacagtgaagcacgggggtggcagcctcatgttgtggagctgctttgctgcaggagggactggtgcccttcacaaaatagatggcgtcatgagaaaggataattatgtggatatattgaagcaacatcaagacatcagtcgggaagttaaagcttggtcgcaaatgggttttccaaaaggacaatgaccccaagcatacttccaacgttgtggagaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagccctgacctcaatcccatagaaaatgtgggcagaactgaaaaagagggTGCGAgaaaagaggcctacaaacctgacttatttacaccagctctgtcaggaggaatgggcagaaattcacccaacttattgtgggaagcttgtggaaggctaaccgaaacgtttgacccaagttaaacaatttaaaggcaatgctaccaaataccaattgagtgtacataaacttctgacccactgggaatgtgatgaaagaaacaaaagctgaaataaatcactctctctattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaaaacagggatttttttaccaggattacatgtcaggaattgtgaaa
>TU492320
cctcctctctctttgtcaGTGACAAACATACTCTCAGACAGTTCCCTTGACCGTAGGATGAAGTCAACCCTAGACACTGATCCGAAGTCAGTCTTGCATCTTCAGTCCATAATGGTTAAATTGAGGACCCACTGAGGGTAAGCGGATCCTAGATCTTTATCTAATGGCCAACTTGTACCCAGAGCATTATCTCACAGCGTCACACTCACAGTATTTCATAATCTCCCAAAAACCACCCACCCAACCCCACCCCGTaccccaaaaacacacacatgctacaTGTCTGCAGGCACCTAGTGACACAAAGAGGGATTGGACAGAGGTGATGTCATAAGGAAGCAGGAAGTACACATGGGAGCCAGCTGCTCCAATCGTTTCATCCAtcctaaatggtaccctattctctgATTTCCATCTATTTTCATGAAGTCATTTCAGACGCAGTCTCAATTCCATTCACAGAGAAGAGTTCCATTCCATCAGTCTCCAACTGCAAATACACTTCCTGAATAATCTTTATGACATCACTGACTACCCCTCTCAGTCTCATTCTAGGAAGACACCCGGTTGGGTGATAGGACTCAGGTTGCTTGTTGACAAGCACTGGTTAAGAGCAGTACGGTGTGTAGTTTGTTCTACTGGTTTATAGATCATACGAATGAGTTCATCTAGTCAATGGTTAAGACTGGTCAGTCAATCCAGGAAATATGGAGGTTAGTGGACTGTTGCAGTTCTTGTGTGTTGTGAGCAGAGAACATTTAAGTGGAGTACtcagtatatgtactgtatgtaggggAGGACTAAGAGAGTGTCAAATGGAGGGACGGGATCTGTGTTTAAAAGGGGAGGGGGTGTCTGTGTTTGGTAGGAGAAAGTGATGAAGGTCCGATATAAGTGCACTCAACAAGCGGGGAGGCAGACATTTGCTCACACTCATGCACACTGCATCAACACTGCACACACTCCCCTACACACGCAACATGATTAATCGAGTTGCACGACTACAGTGACTGTACAGTCCACAGATAGGACAACACACCCTCatctatttcccccccccccctcacaacACTCATCTCACCAACCTCTGCATCACTCTCTgtcacctcttctccctcctcattGATCGATCATTGGACATTCTAGACTCTTAAGGAAactacagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtagcgcaGGACAGGggcaggacagcagacagtataATCCTCTGCTTTAGTCTAGTTGGTCAGTGGTTCAACCTTCAATCGGCACATAATTCCCCATAAAGGCAAATATCAAAATCAAATTAGACTAGTTCACATGACATTCAACAATAATTTTGGCAAACGTAAGAGTTTTGGGGAGCGTGAGTCGGTGTTGTATGGTATACAGTATGCTGTTAATATGTGTCAGTCCACAGAATCCTGTTCCGTCATtggtccctctctcttcctgttttgcAGCAGGACTGGCACCCCCTTTGTTTCGttatatagatgtgtgtgtgtgtgtgtgtgtatatatataaatatatatatgaagtttacatacacttgggttggagtcattaaaactagattttcaaacactccacttcttgttagcaaactatagttttggtaagtcggttaaggactttgtgcatgacaagtaatttttccaacaatcgttaacagacagattatttcaattataagtcactatatcacaattctagtgggtcagaagtttacatacactaagttgactgtgcctttaaacagcttggaagattccagaaaaggatgtcatggttttagaagcttctgataggctaattgacatctcttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagatatcagccaagacctcagaaaaaaaaattgtagacctccacaagtctggttcatccttgggagcaatttccaaacgcctgaaggtaccatgttcaactgttaaaacaatagtacgcaagtataaacaccatgggacgacatagccgtcataccgctcaggaaggagacgtgttctgtctcctagagatgaacgtactttggtgcgaaaagtgcaaatcaatcccagaacagcagcaaaggaccttgtgaagatgctggaggaaacaggtacaaaagtatctatatccacagtaaaacaagtcctatatcggcataacctgaaaggacgctcagcaaggaagaagccaatgctccaaaaccaccataaaagagccagactacagtttgcaactgcacatggggacaaagatcatacttttttgaagaagaaatgccttctggtctgatgaaacaaaaatagaactgtttggccataatgaccatcgttatgtttggaggaaaaagggggaggcttgcaagccgaagaacaccatcccaacagtgaagcacgggggtggcagcctcatgttgtggagctgctttgctgcaggagggactggtgcccttcacaaaatagatggcgtcatgagaaaggataattatgtggatatattgaagcaacatcaagacatcagtcgggaagttaaagcttggtcgcaaatgggttttccaaaaggacaatgaccccaagcatacttccaacgttgtggagaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagccctgacctcaatcccatagaaaatgtgggcagaactgaaaaagagggTGCGAgaaaagaggcctacaaacctgacttatttacaccagctctgtcaggaggaatgggcagaaattcacccaacttattgtgggaagcttgtggaaggctaaccgaaacgtttgacccaagttaaacaatttaaaggcaatgctaccaaataccaattgagtgtacataaacttctgacccactgggaatgtgatgaaagaaacaaaagctgaaataaatcactctctctattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaaaacagggatttttttaccaggattacatgtcaggaattgtgaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU492317 False 3103 lncRNA 0.43 2 71366998 71370128
TU492319 False 3107 lncRNA 0.43 2 71366998 71370128
TU492320 True 3105 lncRNA 0.43 2 71366998 71370128
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Neighbor

gene id symbol gene type direction distance location
si:dkey-183n20.15 LOC106613949 coding upstream 12080 71341502 ~ 71354918 (+)
LOC110522992 LOC106613477 coding upstream 42268 71309344 ~ 71324730 (+)
LOC110524471 LOC106613937 coding upstream 216898 71139770 ~ 71150100 (+)
impact ycu9 coding upstream 236770 71107095 ~ 71130228 (+)
LOC110524466 LOC106613934 coding upstream 301840 71055569 ~ 71065158 (+)
LOC110522993 LOC106613952 coding downstream 54243 71424371 ~ 71434943 (+)
mmachc mmachc coding downstream 69988 71440116 ~ 71442558 (+)
LOC110524490 LOC106613954 coding downstream 92649 71462777 ~ 71490438 (+)
LOC110524491 LOC106614023 coding downstream 137339 71507467 ~ 71516303 (+)
echdc2 LOC106584286 coding downstream 147544 71517672 ~ 71531972 (+)
G434853 NA non-coding upstream 36634 71328360 ~ 71330364 (+)
G434835 NA non-coding upstream 60535 71306145 ~ 71306463 (+)
G434832 NA non-coding upstream 66059 71300728 ~ 71300939 (+)
G434831 NA non-coding upstream 66946 71299850 ~ 71300052 (+)
G434825 NA non-coding upstream 71546 71295221 ~ 71295452 (+)
G434925 NA non-coding downstream 88949 71459077 ~ 71510678 (+)
G434956 NA non-coding downstream 149349 71519477 ~ 71519754 (+)
G434957 LOC105030512 non-coding downstream 150490 71520618 ~ 71521807 (+)
G434829 NA other upstream 68098 71298615 ~ 71298900 (+)
G434792 LOC106613943 other upstream 143420 71218789 ~ 71223578 (+)
G434653 NA other upstream 407066 70959610 ~ 70959932 (+)
LOC110524423 LOC106613476 other upstream 3152894 68212224 ~ 68214236 (+)
G430796 LOC106613888 other upstream 3263464 68103179 ~ 68103534 (+)
ralgps2 LOC106613957 other downstream 305743 71552653 ~ 71687963 (+)
G436403 NA other downstream 1133332 72503460 ~ 72504435 (+)
G436588 NA other downstream 1625371 72995499 ~ 72995735 (+)
G437327 NA other downstream 2086173 73456301 ~ 73495084 (+)
LOC110524560 LOC106560270 other downstream 3393076 74729349 ~ 74770168 (+)

Expression

G434840 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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G434840 Expression in each Bioproject

Bar chart with 21 bars.
G434840 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network