XLOC_023518


Basic Information

Item Value
gene id XLOC_023518
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 27463561 ~ 27464451 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046869
CAGCGGCTCAGAAGCAGCAGATCAGTAGTGAAAACCCTCAGCAATCATGGATCCGTCCTCAGCATCTTATCAAATGATCATTTTGTCCTGTTTGTTTTTGCTTCTGTCAGCTTTTACACCAGATGGTGAGTATCCTACATACTGCACACACACTGTGTTCTCAATAGTTTGTTTTAATGTCATACTAAACCCGTTTTAGATTCACACATAAGTCAAAATAATGGACTTCAAGCTAAAAAAGtgttacatTTTCCCCGCAAAGATGCTGTTGACCAAAAAGGCAAAATCTGCTTCAGGAATCCCACAACAGAAGAACCACAGATTGAAATCAGAGCTTGTTTCAACCTTCGAAAAACAAGACATTGTCCTGCGTGTGTGTTGTAAGTTAGTACAGAAACCTTCAAAAATACAATCTCCCCGTCAATAA
>TCONS_00046870
CAGCGGCTCAGAAGCAGCAGATCAGTAGTGAAAACCCTCAGCAATCATGGATCCGTCCTCAGCATCTTATCAAATGATCATTTTGTCCTGTTTGTTTTTGCTTCTGTCAGCTTTTACACCAGATGATTCACACATAAGTCAAAATAATGGACTTCAAGCTAAAAAAGtgttacatTTTCCCCGCAAAGATGCTGTTGACCAAAAAGGCAAAATCTGCTTCAGGAATCCCACAACAGAAGAACCACAGATTGAAATCAGAGCTTGTTTCAACCTTCGAAAAACAAGACATTGTCCTGCGTGTGTGTTGTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046869 False 427 lncRNA 0.39 3 27463561 27464451
TCONS_00046870 True 310 lncRNA 0.41 4 27463604 27464451

Neighbor

gene id symbol gene type direction distance location
XLOC_023517 NA coding downstream 37 27462936 ~ 27463524 (-)
XLOC_023516 ccl34b.9 coding downstream 2266 27459604 ~ 27461295 (-)
XLOC_023515 ccl34b.8 coding downstream 11073 27450085 ~ 27452488 (-)
XLOC_023514 si:dkey-25o1.7 coding downstream 27242 27434876 ~ 27436319 (-)
XLOC_023513 CR383669.2 coding downstream 32949 27428141 ~ 27430612 (-)
XLOC_023519 cxl34b.11 coding upstream 5646 27470097 ~ 27473771 (-)
XLOC_023520 NA coding upstream 25364 27489815 ~ 27491197 (-)
XLOC_023521 NA coding upstream 292425 27756876 ~ 27776814 (-)
XLOC_023522 hs6st1b coding upstream 319495 27783946 ~ 27879182 (-)
XLOC_023523 NA coding upstream 444504 27908955 ~ 27951204 (-)
XLOC_023665 dre-mir-735 misc upstream 10713510 38177961 ~ 38178027 (-)
XLOC_023507 NA non-coding downstream 468397 26948712 ~ 26995164 (-)
XLOC_023503 NA non-coding downstream 815538 26641899 ~ 26648023 (-)
XLOC_023496 NA non-coding downstream 1094376 26354696 ~ 26369185 (-)
XLOC_023491 NA non-coding downstream 1226983 26232700 ~ 26236578 (-)
XLOC_023524 NA non-coding upstream 616937 28081388 ~ 28115364 (-)
XLOC_023530 NA non-coding upstream 1088116 28552567 ~ 28561226 (-)

Expression


Co-expression Network