G435509 (LOC106614023)


Basic Information

Item Value
gene id G435509
gene name LOC106614023
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71515283 ~ 71516296 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU493098
ACACAATAGATATTATGTTTCACATTGAGCAGATCTCAAATGCTACATTCATAGATATACATtcacagggtggcaggtagcctcgtggttagagcgttgggccagtaaccgaaaggttgctggattgaatccccaaggtaaaaatcagttgttctgcccctgaacaaggcagttaacccactattccccgataggctgtcattgtaaataataatttgttcttaactaacttgcctaatAAAATAGAAACACTGAATAAGATGCATTGTCAGTTTGGCACAGAACAAGTGTATTAGCGACCAAAGCCCTGTTCAGTATGACACAATGTAGTCCAAACATACTAGGTTGGAATGGATCTAATGTTTATGGAGGTGTCCATGATATAACGGAAGTGGTTTGCTGAACCACGCTCGCAcgatgagtaaccttgcctgagacctgaagacttgctATAGCTCCCCGAGCAAATACTAAGGCTTTTGCTTAATGGACTAGCAAATGCGCGGAGGTCCCAGGTTAAAAGAAAAGTCACACACTACTAGCCACACTTGTTCTGTCTTACAGAGTTAATCTGTGGATGGAACCTGTGTTGCCCCTGGCGAATATCTCAGTGATTGACAGCTCCCTCTCGCAGGGGGGTCGACCTCGGTAACGGATGTAGCGAGCTTTACGAGCCTCGGCCAGTGATTGGTTGAAATCAGGCAGGAGGTGGAGCGTTCTGGGCCGACCATCAGCAGCGAGGACAtcggaggggggaggagggagaggataatactcctctttctctctgtctctgtctgtcctcccgttctcttcctcctttctcgttgccctcccctctctccccctcacatattctctctctctctcagctctcccctccctcccttccacttcccctctctctccca
>TU493100
CTCATGGCCTCTATTTTATTACGATAAGTCATGATTCATGAGCCAACAGTTTTTAACATTATACTTTACATACATTGAGAATTTCAATCAGGTACATGATTTAACACAATAGATATTATGTTTCACATTGAGCAGATCTCAAATGCTACATTCATAGATATACATtcacagggtggcaggtagcctcgtggttagagcgttgggccagtaaccgaaaggttgctggattgaatccccaaggtaaaaatcagttgttctgcccctgaacaaggcagttaacccactattccccgataggctgtcattgtaaataataatttgttcttaactaacttgcctaatAAAATAGAAACACTGAATAAGATGCATTGTCAGTTTGGCACAGAACAAGTGTATTAGCGACCAAAGCCCTGTTCAGTATGACACAATGTAGTCCAAACATACTAGGTTGGAATGGATCTAATGTTTATGGAGGTGTCCATGATATAACGGAAGTGGTTTGCTGAACCACGCTCGCAcgatgagtaaccttgcctgagacctgaagacttgctATAGCTCCCCGAGCAAATACTAAGGCTTTTGCTTAATGGACTAGCAAATGCGCGGAGGTCCCAGGTTAAAAGAAAAGTCACACACTACTAGCCACACTTGTTCTGTCTTACAGAGTTAATCTGTGGATGGAACCTGTGTTGCCCCTGGCGAATATCTCAGTGATTGACAGCTCCCTCTCGCAGGGGGGTCGACCTCGGTAACGGATGTAGCGAGCTTTACGAGCCTCGGCCAGTGATTGGTTGAAATCAGGCAGGAGGTGGAGCGTTCTGGGCCGACCATCAGCAGCGAGGACAtcggaggggggaggagggagaggataatactcctctttctctctgtctctgtctgtcctcccgttctcttcctcctttctcgttgccctcccctctctccccctcacatattctctctctctctcagctctcccctccctcccttccacttcccctctctctccca
>TU493096
CTCATGGCCTCTATTTTATTACGATAAGTCATGATTCATGAGCCAACAGTTTTTAACATTATACTTTACATACATTGAGAATTTCAATCAGGTACATGATTTAACACAATAGATATTATGTTTCACATTGAGCAGATCTCAAATGCTACATTCATAGATATACATtcacagggtggcaggtagcctcgtggttagagcgttgggccagtaaccgaaaggttgctggattgaatccccaaggtaaaaatcagttgttctgcccctgaacaaggcagttaacccactattccccgataggctgtcattgtaaataataatttgttcttaactaacttgcctaatAAAATAGAAACACTGAATAAGATGCATTGTCAGTTTGGCACAGAACAAGTGTATTAGCGACCAAAGCCCTGTTCAGTATGACACAATGTAGTCCAAACATACTAGGTTGGAATGGATCTAATGTTTATGGAGGTGTCCATGATATAACGGAAGTGGTTTGCTGAACCACGCTCGCAcgatgagtaaccttgcctgagacctgaagacttgctATAGCTCCCCGAGCAAATACTAAGGCTTTTGCTTAATGGACTAGCAAATGCGCGGAGGTCCCAGGTTAAAAGAAAAGTCACACACTACTAGCCACACTTGTTCTGTCTTACAGAGTTAATCTGTGGATGGAACCTGTGTTGCCCCTGGCGAATATCTCAGTGATTGACAGCTCCCTCTCGCAGGGGGGTCGACCTCGGTAACGGATGTAGCGAGCTTTACGAGCCTCGGCCAGTGATTGGTTGAAATCAGGCAGGAGGTGGAGCGTTCTGGGCCGACCATCAGCAGCGAGGACAtcggaggggggaggagggagaggataatactcctctttctctctgtctctgtctgtcctcccgttctcttcctcctttctcgttg

Function

NR:

description
uncharacterized protein LOC110524491 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU493098 False 911 lncRNA 0.48 1 71515283 71516193
TU493100 False 1014 lncRNA 0.46 1 71515283 71516296
TU493096 True 933 lncRNA 0.45 1 71515364 71516296

Neighbor

gene id symbol gene type direction distance location
LOC118964746 NA coding downstream 62022 71453146 ~ 71453261 (-)
LOC110524487 LOC106613951 coding downstream 75165 71435035 ~ 71440118 (-)
ipo13 LOC106613950 coding downstream 91774 71371673 ~ 71423509 (-)
pfas pfas coding downstream 148596 71355068 ~ 71366687 (-)
hook1 LOC106613947 coding downstream 173939 71328260 ~ 71341344 (-)
zyg11 LOC106613955 coding upstream 16156 71532452 ~ 71542743 (-)
angptl1a LOC106613958 coding upstream 104877 71621173 ~ 71661464 (-)
faslg LOC106613961 coding upstream 265385 71781681 ~ 71792919 (-)
si:dkey-86e18.1 LOC106613962 coding upstream 301249 71817545 ~ 71827015 (-)
jun jun coding upstream 315345 71831641 ~ 71833770 (-)
G435496 NA non-coding downstream 2091 71512841 ~ 71513192 (-)
G435435 NA non-coding downstream 80342 71432611 ~ 71434941 (-)
G435386 NA non-coding downstream 216608 71298465 ~ 71298675 (-)
G435383 NA non-coding downstream 220262 71294743 ~ 71295021 (-)
G435510 NA non-coding upstream 1327 71517623 ~ 71517854 (-)
G435511 NA non-coding upstream 2971 71519267 ~ 71519786 (-)
G435512 LOC106573797 non-coding upstream 4138 71520434 ~ 71520943 (-)
G435513 NA non-coding upstream 5613 71521909 ~ 71522155 (-)
G435517 NA non-coding upstream 11529 71527825 ~ 71528031 (-)
il23r LOC106613945 other downstream 228291 71285725 ~ 71308015 (-)
LOC110524478 LOC106613944 other downstream 284694 71226012 ~ 71242283 (-)
G435176 NA other downstream 446396 71068025 ~ 71068887 (-)
G435234 NA other downstream 523485 70990892 ~ 70991798 (-)
G433683 LOC106613912 other downstream 1990493 69486406 ~ 69524790 (-)
G436172 LOC100136696 other upstream 524666 72040962 ~ 72121697 (-)
G436830 LOC106605384 other upstream 1071988 72588284 ~ 72588576 (-)
G436842 NA other upstream 1100000 72616296 ~ 72616944 (-)
G436847 NA other upstream 1155858 72672154 ~ 72672826 (-)
G436873 NA other upstream 1258265 72774561 ~ 72775868 (-)

Expression


Co-expression Network