G436247 (myoc)


Basic Information

Item Value
gene id G436247
gene name myoc
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72226993 ~ 72256086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU493929
GTGCCACGTCGAGGCTGGATACTCGTTCGCTCGGACGCAGCCCCTCACATCCCCGGCACACACTGGACCGGGCCGGGACGTGACCAGAACAGGACCCAGACCAATAGAAGAGGACAGCCAGTGTGTGTGACCCTTCACTCAggatgagaaaggagaggagacattGAGAATACTTTAACCAGTTTGTCAATGAAACCTTTGGATGGGTGAAAAACAAGATAAAAGAAAGGAATGAGAGAAgataaaatggagagagaggagacatgaagaATCTTTCTACTCCTCCAACACTTCAGAGATGAAAAGCAAAGAGAAAGGAacggagagaaagaaatagaaggagagaagagggagaggagagaACTGACTGTGTGATATAGCAAGCAGAccggacacagacagacaccctacTGTGCTGTGGTAAAAGGCTGCAGGTGAGTCTGTAGATTATAATGGTTGGATGCTGTATGggaatgtgtgtgtacagtgtaatGTGAGTGTATGGgaatgtgtatgtacagtgtaaTGTGAGTGTATGGgaatgtgtatgtacagtgtaaTGTGAGTGTATGGgaatgtgtatgtacagtgtaaTGTGAGTGTATGGGTGCTGTATGGGAATGTGTATAAGGTGACCTTGTTGGTGCTGTAGACGGCCCACAGGCCCTGCTCGTCCACCCCCAGGTCCACATCGGTGTAGCCGCCCCAGGAGTAGGGGAACTGGCCGTGGAAGCCAGCGTGGGGCAGGTCTCGGCGGGAAGCGATGCTCTCAGACACCAGGTCGTACCTCAGCAGGGTGCGGCTGCGGCGGCGCTGGTAGTACAGAGAGCCGCGGTACAGAGTTGCTCCAGTACTCTCCACTGGCTCCGGCAACAGCAA

Function

symbol description
myoc Predicted to act upstream of or within positive regulation of cell migration; regulation of cell-matrix adhesion; and regulation of stress fiber assembly. Predicted to be located in several cellular components, including extracellular space; mitochondrial outer membrane; and rough endoplasmic reticulum. Is expressed in caudal fin skeleton; eye; and postcranial axial skeleton. Human ortholog(s) of this gene implicated in juvenile glaucoma; low tension glaucoma; ocular hypertension; open-angle glaucoma; and primary open angle glaucoma. Orthologous to human MYOC (myocilin).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU493929 True 879 lncRNA 0.51 4 72226993 72256086

Neighbor

gene id symbol gene type direction distance location
LOC110524500 NA coding downstream 166579 72059571 ~ 72060414 (-)
prdx6 LOC106584278 coding downstream 194946 72022726 ~ 72032047 (-)
jun jun coding downstream 393223 71831641 ~ 71833770 (-)
si:dkey-86e18.1 LOC106613962 coding downstream 399978 71817545 ~ 71827015 (-)
faslg LOC106613961 coding downstream 434074 71781681 ~ 71792919 (-)
LOC118964719 NA coding upstream 15790 72271876 ~ 72272749 (-)
LOC110524508 LOC106613974 coding upstream 19372 72275458 ~ 72359871 (-)
LOC110524515 LOC106560227 coding upstream 595982 72852068 ~ 72866268 (-)
LOC110524517 LOC106560232 coding upstream 749169 73005255 ~ 73010401 (-)
LOC110524518 LOC106560233 coding upstream 797758 73051611 ~ 73062414 (-)
G436272 NA non-coding downstream 7702 72219054 ~ 72219291 (-)
G436271 NA non-coding downstream 8233 72218531 ~ 72218760 (-)
G436270 NA non-coding downstream 9896 72216897 ~ 72217097 (-)
G436240 NA non-coding downstream 10608 72212395 ~ 72216385 (-)
G436242 NA non-coding downstream 14656 72211741 ~ 72212337 (-)
G436286 NA non-coding upstream 9504 72265590 ~ 72266584 (-)
G436300 NA non-coding upstream 54596 72310682 ~ 72310987 (-)
G436336 NA non-coding upstream 139628 72395714 ~ 72396482 (-)
G436337 NA non-coding upstream 140443 72396529 ~ 72396782 (-)
G436172 LOC100136696 other downstream 105296 72040962 ~ 72121697 (-)
il23r LOC106613945 other downstream 940001 71285725 ~ 71308015 (-)
LOC110524478 LOC106613944 other downstream 996404 71226012 ~ 71242283 (-)
G435176 NA other downstream 1158106 71068025 ~ 71068887 (-)
G435234 NA other downstream 1235195 70990892 ~ 70991798 (-)
G436830 LOC106605384 other upstream 332198 72588284 ~ 72588576 (-)
G436842 NA other upstream 360210 72616296 ~ 72616944 (-)
G436847 NA other upstream 416068 72672154 ~ 72672826 (-)
G436873 NA other upstream 518475 72774561 ~ 72775868 (-)
G437054 NA other upstream 838708 73094794 ~ 73095336 (-)

Expression


Co-expression Network