XLOC_023526 (cox4i1l)


Basic Information

Item Value
gene id XLOC_023526
gene name cox4i1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 28231602 ~ 28245872 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046525
ATGCTGTCTTCTCGTGCACTGGTGCGGGGACTACAGTCTGGATTCTGGAGGAGACTGTCAACTTCATCTGGAATCTGGGCTGCACACACTCATGATGTTGATGTGACTGACTGCAGTGTTCCTCAGTACAACAACCGTCTGGACACTCCACTGCCAGATGTTCCATTCGTCAGAAACCTCAGTGCcgaacagaagaaactcaaagagAAGGAGAAGGGGCCATGGACCCAACTCAGCAAGGAGGAGAAGCTAGCAATATACAGACTCACACATGAGCTGTCGTTCCCAGAGATGAGGAAAGGCTCCAAAGAATGGATGACTGTCCTTGCGGGCGTCTTCTTCTTCCTTGGCTTCACAGGGCTGCTTGTTTGGTGGCAGCGTGTCTTTGTGTACGGCGACgttccacacacactctctcaggAGTGGATTGAAAAACAGACTCAGAGGATGTTAGATATGAAAGTGAACCCCATCACTGGATTCGCTCATAAGTGGGACTACGAAAAGAAGCAGTGGAAATAAATGCATTGCGATGTGACGACAGAGAATGTATCAGGTTTGCACTAATGAGGCGTTCCAAACTCAATGCTGTTTAACTGGCAGCCTTAAAATATAAACCTGTGAGAAAATTCCAATAAATGCACTGAATTTAACCTG
>TCONS_00046526
ATTCGGCCGAGAGCTATCAGACACCTGACACACACAAGCCACACGCTTTAACAGACCCATAGAACCATAAAGACAGAGCACGTAGGCAACTTCTAGTCGACCAGCTCAGATCTTCATATCTCAAGATGCTGTCTTCTCGTGCACTGGTGCGGGGACTACAGTCTGGATTCTGGAGGAGACTGTCAACTTCATCTGGAATCTGGGCTGCACACACTCATGATGTTGATGTGACTGACTGCAGTGTTCCTCAGTACAACAACCGTCTGGACACTCCACTGCCAGATGTTCCATTCGTCAGAAACCTCAGTGCcgaacagaagaaactcaaagagAAGGAGAAGGGGCCATGGACCCAACTCAGCAAGGAGGAGAAGCTAGCAATATACAGACTCACACATGAGCTGTCGTTCCCAGAGATGAGGAAAGGCTCCAAAGAATGGATGACTGTCCTTGCGGGCGTCTTCTTCTTCCTTGGCTTCACAGGGCTGCTTGTTTGGTGGCAGCGTGTCTTTGTGTACGGCGACgttccacacacactctctcaggAGTGGATTGAAAAACAGACTCAGAGGATGTTAGATATGAAAGTGAACCCCATCACTGGATTCGCTCATAAGTGGGACTACGAAAAGAAGCAGTGGAAATAAATGCATTGCGATGTGACGACAGAGAATGTATCAGGTTTGCACTAATGAGGCGTTCCAAACTCAATGCTGTTTAACTGGCAGCCTTAAAATATAAACCTGTGAGAAAATTCCAATAAATGCACTGAATTTAACCTG

Function

symbol description
cox4i1l Predicted to enable cytochrome-c oxidase activity. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to several human genes including COX4I1 (cytochrome c oxidase subunit 4I1).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130814-2 Predicted to enable cytochrome-c oxidase activity. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to several human genes including COX4I1 (cytochrome c oxidase subunit 4I1).

Ensembl:

ensembl_id ENSDARG00000012388

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046525 False 657 mRNA 0.47 4 28231602 28243186
TCONS_00046526 True 782 mRNA 0.47 5 28231602 28245872

Neighbor

gene id symbol gene type direction distance location
XLOC_023525 bcl2a coding downstream 1984 28137210 ~ 28229618 (-)
XLOC_023524 NA coding downstream 116238 28081388 ~ 28115364 (-)
XLOC_023523 NA coding downstream 280398 27908955 ~ 27951204 (-)
XLOC_023522 hs6st1b coding downstream 352420 27783946 ~ 27879182 (-)
XLOC_023521 NA coding downstream 454788 27756876 ~ 27776814 (-)
XLOC_023527 prkag2a coding upstream 6648 28252520 ~ 28381437 (-)
XLOC_023528 nrros coding upstream 165091 28410963 ~ 28419444 (-)
XLOC_023529 fbxo45 coding upstream 180028 28425900 ~ 28437833 (-)
XLOC_023530 NA coding upstream 306695 28552567 ~ 28561226 (-)
XLOC_023531 tecrl2a coding upstream 398546 28644418 ~ 28649360 (-)
XLOC_023665 dre-mir-735 misc upstream 9932089 38177961 ~ 38178027 (-)
XLOC_023520 NA non-coding downstream 740405 27489815 ~ 27491197 (-)
XLOC_023518 NA non-coding downstream 767151 27463561 ~ 27464451 (-)
XLOC_023534 CT961047.1 non-coding upstream 726212 28972084 ~ 28974899 (-)
XLOC_023536 CR388050.3 non-coding upstream 788752 29034624 ~ 29034740 (-)
XLOC_023537 CR388050.1 non-coding upstream 806836 29052708 ~ 29052826 (-)
XLOC_023538 CR847965.1 non-coding upstream 1227984 29473856 ~ 29473975 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location