G436903 (LOC106560217)


Basic Information

Item Value
gene id G436903
gene name LOC106560217
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72826445 ~ 72828605 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU494648
CATGGATGTTAATAAAACAGATATTGATAAACATGGATGTTGATAAAACAGATATTGATAAACATGGATGTTGATAAAACAGATGTTGATAATAAAGGGCTGCAGTATAGACAAGGGCTGTGTTAAGGAAAGACACTTATAGGCTCATAGACAGAACAGAGGTTGAGAGAGCTACAGAaacctagacagacagacatgttggTATTGCTTGATACCTTCTGGTTGCATAACTGAAGCCTGCCTATTTTATGGCACAGAAGTCTGTGGACAGAATGATCATTGTTATTATCATTTACAAAATGAGTTTGGCAAATCGACAATCAGCTCTTAAAGTCTTGTGACTGTATAACTCCAGGAGAGCTGACTCCAGCGGCTTGATTGACTTAGAAAATAAACATTTCCGTTTGTCTGTTTTAATCCATATTGTACAAAAGCTATTATAGAGAATGAGCAATTCATTCACAGAATCAGTTAGTTTGGCAACATACATCCGAAGTCCGGCACTATCCGATTTGTCAATGTTCGTTCATGCCAGGCAATGCCTGTTAGGTTGGCAACATCCATGCCTCAGTGTCCATTCACTTTGAAGCCTTCCCATTCCCTCTGAGAAGAGACATTTGgaaaaacagtgtgtgtgtgagcagctcCCAGAGAGTCTGTTCCTGCATAGTGATCCAGCAGACACTCACAAAAAGGCGAAACACCCAAACAGCCAATCAGATGCCAAGATCCCAATAAACCGGCCAATCAGAAATAAGGATCTCAGCATACCAGTCCATACCAGGATCCACTTGCTACAGACACTAATTCTGTCCATGTCTGATGCTGTGTGTGTTGGGAAAGGAGACAACGCTTGGCCCAGTCACCCTTAGGCAGCATAGCCTCTAGCAATgtttgatggagagaaagagagagagaatgaaacgCGAGTAGAGGGGGTAGATGGAGTGTTCCATCCTTTGTAAGAGGGGATGCCAGGCTGCTGCTAGAgatgagtaacacacacacacacacacacacaagccCAGGGCCCCTGACCTATAGTTCTATTGCCCCCAGGCTCTCACCTAAAGGAATTAGGCTTCTATGGGTTTCTATTGGCAGTTTTGGTGCCAGAGTGTCTGGAAGATGCTTTGGGGGTTGTGCACCCCACCTTGAAAATAATGATACGGTCACTTAGTTTGTTTTATCTCATGTTGAATTAGactgtgaaaagagagagaaatacagatgtaagatcttcatTTGAGTCAGCTtgctgcagcaacaggacatgtgaattattatgtggattataattaattacatttttgtaggtgttgatacatttttcatgacAAATCAAGTCAAAATTCAAAGTGGAAAtcacaaacttcagaagcctttttaaacctcaaatacactacaagtttaaaaTGCCTTGCacttgcaggaaagttctcctgcaacagggtgatcctacatctgtagagtgGGCTCAATGATAACCTGTGATTTGAAATTCAATTAATATCCTTTAGTCTTTTTCAGGTATGAGGTACCTGTTTTCAACCCATCTCTCCCCCGtcccctcctttctctgtctgagAGGAAGAAGACTTTCTGGACTTCAAGTCCTTGAGGGCAAAGTTCCAGGATGAGGAAGTGCTGAAGCAGCCCGGGACCAAATCTGCTCTCCCTGAGAAACCTAAAGTCCTGCCTCCTCCTCACAGCCCTACAAACTGCCTTCCTTCCCTCAGCTCCacatcacacacaccctccaactcACTCTGGAGGGTGTGTGTAGCTTgaacctccctcctctcctcccttcaggGGCCGGGTGGCATCGCATCCAGAGTCATCGtcaaggaggagaagaaggtgaAGAGCAAAGACAAGGATGAGGGGAAGGTGAAATTACTAGGTAAAAAGAAGGCAGAGGTGAAAGCTGATAAAGAGaacgtgcgtgcacacacacatggggTTGGTTGGTCAGCATTGGTAGGTCAGTCCAGTTTTCAGTCTCTTTATTTCCTCCCTTTGTTGATCTGGGCATAGAGAGGATCCTTCCCCTGCAGACAGAGATCCTTCCCct

Function

NR:

description
actin cytoskeleton-regulatory complex protein PAN1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU494648 True 2077 lncRNA 0.44 2 72826445 72828605

Neighbor

gene id symbol gene type direction distance location
LOC110524508 LOC106613974 coding downstream 466574 72275458 ~ 72359871 (-)
LOC118964719 NA coding downstream 553696 72271876 ~ 72272749 (-)
LOC110522996 NA coding downstream 591234 72232164 ~ 72235211 (-)
LOC110524500 NA coding downstream 766031 72059571 ~ 72060414 (-)
prdx6 LOC106584278 coding downstream 794398 72022726 ~ 72032047 (-)
LOC110524515 LOC106560227 coding upstream 23463 72852068 ~ 72866268 (-)
LOC110524517 LOC106560232 coding upstream 176650 73005255 ~ 73010401 (-)
LOC110524518 LOC106560233 coding upstream 225239 73051611 ~ 73062414 (-)
LOC110524520 LOC106560236 coding upstream 277434 73106039 ~ 73109903 (-)
LOC110524523 LOC106560237 coding upstream 303497 73132102 ~ 73163431 (-)
G436856 NA non-coding downstream 80172 72741269 ~ 72746273 (-)
G436857 NA non-coding downstream 81890 72741760 ~ 72744555 (-)
G436851 NA non-coding downstream 136062 72689789 ~ 72690383 (-)
G436850 NA non-coding downstream 137263 72688695 ~ 72689182 (-)
G436849 NA non-coding downstream 149682 72676559 ~ 72676763 (-)
G436904 NA non-coding upstream 852 72829457 ~ 72830566 (-)
G436927 NA non-coding upstream 43377 72871982 ~ 72872221 (-)
G437022 NA non-coding upstream 206298 73034903 ~ 73035154 (-)
G437020 NA non-coding upstream 207306 73035911 ~ 73038795 (-)
G437024 NA non-coding upstream 211938 73040543 ~ 73041059 (-)
G436873 NA other downstream 50577 72774561 ~ 72775868 (-)
G436847 NA other downstream 153619 72672154 ~ 72672826 (-)
G436842 NA other downstream 209501 72616296 ~ 72616944 (-)
G436830 LOC106605384 other downstream 237869 72588284 ~ 72588576 (-)
G436172 LOC100136696 other downstream 704748 72040962 ~ 72121697 (-)
G437054 NA other upstream 266189 73094794 ~ 73095336 (-)
G437074 NA other upstream 293507 73122112 ~ 73125038 (-)
G437079 NA other upstream 317753 73146358 ~ 73147128 (-)
LOC110524526 LOC106584218 other upstream 542003 73370439 ~ 73421683 (-)
G439002 NA other upstream 2036654 74865259 ~ 74927797 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G38490 NA non-coding CI01000005 null 4136236 ~ 4136442 (-)
tiger barb (Puntius tetrazona) G29445 NA non-coding NC_056702.1 CM032071.1 17823219 ~ 17824264 (-)
mexican tetra (Astyanax mexicanus) G32492 NA misc NC_035899.1 CM008302.1 71970504 ~ 71982053 (-)