G436516 (LOC106560227)


Basic Information

Item Value
gene id G436516
gene name LOC106560227
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72858806 ~ 72861016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU494225
GTCCAGAGTAATCAGAGTCATATAGGTGTCAGTATATTCTAAAAGACAAGTGGTTTTGTTTGACATTTGCTACTGCTAATATAGTGGCTAACTCAATTTGTTATGtgcatgcatgagtgtgtgtaGCATACCAAAATCAGCTATCTTGGCGTTCTTGGAATGGTCCAGCAGAACATTCTCAGGTTTGAGGTCTCTGTGCACCACCATGTGTCTGTGGCAGTAGTCTACCCCTGAGATGATCTGTTGGAACAACCGACGAGCCTCTTTGTCTTCTACCCGTCCGTGTTTGCAGATGTAGTCAAACAGCTCTCCTCCTGAAACATACTCCATCACCATGAAGAAATCTGTAGGCGTACTGATCACCtggtacctacacacacacacacacacacacacacacacacacacacacac

Function

NR:

description
PREDICTED: 5'-AMP-activated protein kinase catalytic subunit alpha-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU494225 True 414 lncRNA 0.45 2 72858806 72861016

Neighbor

gene id symbol gene type direction distance location
LOC110524513 LOC106560217 coding upstream 7492 72833897 ~ 72851314 (+)
LOC110524511 LOC106560226 coding upstream 28226 72473117 ~ 72830580 (+)
LOC110524512 NA coding upstream 28226 72829316 ~ 72830580 (+)
LOC110524509 LOC106613979 coding upstream 465356 72377782 ~ 72393450 (+)
LOC110524510 LOC106613977 coding upstream 481224 72362852 ~ 72377582 (+)
LOC110524516 LOC106560230 coding downstream 14169 72875185 ~ 72918731 (+)
LOC110524519 LOC106560231 coding downstream 146841 73007857 ~ 73052550 (+)
LOC118964641 NA coding downstream 176263 73037279 ~ 73040402 (+)
LOC110522997 dhcr24 coding downstream 232634 73093650 ~ 73103407 (+)
LOC110524521 LOC106560235 coding downstream 252304 73113320 ~ 73118094 (+)
G436473 NA non-coding upstream 110305 72746163 ~ 72748501 (+)
G436462 NA non-coding upstream 156356 72701870 ~ 72702450 (+)
G436461 NA non-coding upstream 167740 72690824 ~ 72691066 (+)
G436460 NA non-coding upstream 169550 72688566 ~ 72689256 (+)
G436459 NA non-coding upstream 182103 72676471 ~ 72676703 (+)
G436592 NA non-coding downstream 137172 72998188 ~ 72998413 (+)
G436595 NA non-coding downstream 139762 73000778 ~ 73000997 (+)
G436606 NA non-coding downstream 194884 73055900 ~ 73056733 (+)
G436610 NA non-coding downstream 204484 73065500 ~ 73065729 (+)
G436613 NA non-coding downstream 212300 73073316 ~ 73073692 (+)
G436403 NA other upstream 354371 72503460 ~ 72504435 (+)
ralgps2 LOC106613957 other upstream 1171637 71552653 ~ 71687963 (+)
G434829 NA other upstream 1559906 71298615 ~ 71298900 (+)
G434792 LOC106613943 other upstream 1635228 71218789 ~ 71223578 (+)
G434653 NA other upstream 1898874 70959610 ~ 70959932 (+)
G436588 NA other downstream 134483 72995499 ~ 72995735 (+)
G437327 NA other downstream 595285 73456301 ~ 73495084 (+)
LOC110524560 LOC106560270 other downstream 1902188 74729349 ~ 74770168 (+)
G438719 NA other downstream 1910993 74772009 ~ 74776469 (+)
LOC110524571 LOC106560285 other downstream 2310288 75161317 ~ 75178287 (+)

Expression


Co-expression Network