G437028 (LOC106585657)


Basic Information

Item Value
gene id G437028
gene name LOC106585657
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73049063 ~ 73050363 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU494792
TTTTTGACTGCCAACGGATGGGTGAGAATCTTCCTCCTTCACCCATTAACACGATTAGATGTCCACCTTGTGTGCCTCCATCTGTAAGGTTCCCTAGCGAAGCATCACTGAAGACAACTAGTTTCAAAGAATCATCTTTTCCAACATGCTGAAACTTTAAAGTCACTTGTTGTGATTTCAGTTTACAAACAACTTTGTGTGCCTCATGAATGGTTTGTACAGTGGCGTGTTTTGTGATAGATGCCAAGTTGCAACCATCAAACATTACATCAGGTCTACTATGTCTAGCAACCCATAAAATTTGTCCTATCTTTGACCTCAATTGATCAGCTTCAATTCCACAGAGGGGAATTCCTTTGTACAGCTCTTGAAGAATCCAGGTGAATGGGTTGAAGATTCTTGATATAGCTCTCCTGTTGCATCAGTATTTTTCCATCAACTGTAATAAACTCTATGCCAACATAACAAAAATGATCATGCTCCTCACGGCCGACCTAGAAAACAGCTTTGAGGTGTGGAATCCCAGTTGAAGCAAAGGTCTGTGAGCCACCCCAGATAAAGTCATCAACATGACAGGCAAGTACTCCAGTCACATTGCAGTCTTGATCAAGCCAATAGAAGACTGCAGGATCCACTTGTGAAATGTTTCCACCTGTATTCAGCATTgttgccttgactttgttgtaccaGTAGAGTGATGCATCTACCAGTCGGATGTGAATGTCCCTTGACAGGTCTGTTCCCTGCAAAAATGCAGATTTGATGTCTATGGAATTAAGTTTCCATTTTTTTCTGGCAGATCACTGACATCAGCAATCTGAGTGAGTGAGGAGCATGTTGGTGAATCTTTTGGGAGTTGTTTAGCAGCCAGCTCCTCAAAACCTCTAGCCACTAGACGTGCTTTAGGCACTATTCCAGTTAAGGATTCTTTAAGGGTACACACCCACCTTGTTGAGACGCATTTTTGGCCAATGTCTTGGACTTCCTCAAACACTCAATTTTTCCTCCAATTACTGAGCTCATCTAGCTTAGCTGAGTCAAATGACACGTCCTTTGTTTGAAGTACATCATCATTTTGAATGTCATTCTGTTTCTCGATTTTCCATTGGTTCAATTCTGATATTATCTACAAGTGACAGGTCAGCTGACCCTGCTATACCAGAAAGTGTAGCTGGTTCAGATTACTGCAAGTTGTACCAGTTCTGGTGTTTTCCTTTGGCTTTTTCTGCTCGTCCAATGACGGT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106912169 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU494792 True 1244 lncRNA 0.42 2 73049063 73050363

Neighbor

gene id symbol gene type direction distance location
LOC110524517 LOC106560232 coding downstream 38662 73005255 ~ 73010401 (-)
LOC110524515 LOC106560227 coding downstream 182795 72852068 ~ 72866268 (-)
LOC110524508 LOC106613974 coding downstream 689192 72275458 ~ 72359871 (-)
LOC118964719 NA coding downstream 776314 72271876 ~ 72272749 (-)
LOC110522996 NA coding downstream 813852 72232164 ~ 72235211 (-)
LOC110524518 LOC106560233 coding upstream 3481 73051611 ~ 73062414 (-)
LOC110524520 LOC106560236 coding upstream 55676 73106039 ~ 73109903 (-)
LOC110524523 LOC106560237 coding upstream 81739 73132102 ~ 73163431 (-)
LOC110524524 LOC100194696 coding upstream 124343 73174706 ~ 73180889 (-)
LOC110522885 LOC106560352 coding upstream 137662 73188025 ~ 73188938 (-)
G437016 NA non-coding downstream 3564 73043879 ~ 73045499 (-)
G436981 LOC107697547 non-coding downstream 6292 73041916 ~ 73042771 (-)
G436982 usp24 non-coding downstream 7320 73041083 ~ 73041743 (-)
G437024 NA non-coding downstream 8004 73040543 ~ 73041059 (-)
G437020 NA non-coding downstream 10268 73035911 ~ 73038795 (-)
G437041 NA non-coding upstream 21692 73072055 ~ 73072419 (-)
G437046 NA non-coding upstream 27468 73077831 ~ 73078242 (-)
G437062 NA non-coding upstream 54764 73105127 ~ 73105786 (-)
G437064 NA non-coding upstream 61242 73111605 ~ 73111804 (-)
G436873 NA other downstream 273195 72774561 ~ 72775868 (-)
G436847 NA other downstream 376237 72672154 ~ 72672826 (-)
G436842 NA other downstream 432119 72616296 ~ 72616944 (-)
G436830 LOC106605384 other downstream 460487 72588284 ~ 72588576 (-)
G436172 LOC100136696 other downstream 927366 72040962 ~ 72121697 (-)
G437054 NA other upstream 44431 73094794 ~ 73095336 (-)
G437074 NA other upstream 71749 73122112 ~ 73125038 (-)
G437079 NA other upstream 95995 73146358 ~ 73147128 (-)
LOC110524526 LOC106584218 other upstream 320245 73370439 ~ 73421683 (-)
G439002 NA other upstream 1814896 74865259 ~ 74927797 (-)

Expression


Co-expression Network