G436606


Basic Information

Item Value
gene id G436606
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73055900 ~ 73056733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU494329
TTGGCTATTAATTTACTAAAGTTGATCATGACATCCCAGTCAAACAGGAAGTGCAACAGTGGATAGAATGGAACCCTGCAGCAGtggggcagagagagcgagaataaTGCTGTGGATAACCGTGTGCTGTGACAACAAGGCACTTCTGGTTGAGATCATCTGTCTATCCTGATGTCAGCTGTGTGAATAGAAAGAATCCGTGGTGCATGCATGACCACAGAGACACACCCGCACTCACACACTGGAGAATGACACAACCTCCCCAAGCAGTCACAGCACAAACAGCTAATGGAGTCCAAAGCAGCAAAAAAGTCTGACAGTGGTTTTAAAGGCTGGGTTATCCATTTGGACTGGTAATAAAGGCTGAGTGCTTCTGGATAGTGAATGCTTAGTGCTGGGTAGATGCTGGCAGCTGGCCTCGCTGCCTGGTGTAGCTCAGTGTTCCACTACAAATATATGGGCGTCGGGCGGACTTGAAAAGTGACATCAACAACTTCAGGTGGtggaaagtaaaaaaaaatatatatatatatatttgttatatATGTCTTTATAGGAGTGCAGTGTATCACACTATAGTAGTCTTAATAGTAGCATTATAAACACACTCCTCATTCTTCAAACAAATATGTAAACCTGTCATGTTAACATGTAAACAACGCTGAGGCCACCAACCCCTTACAGCCCCTCCATTCCAGAACAACGTCTCTCCCAGCACGGGTGTGCTTGATTTAGTTCACTGTAATGGCACAAAGGGAATTGTCCAAAgttacagaacagtacagtagtctCCTCAGCCCTCAGAGGTCAGAGGGACCCCGGCTCTTCATGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU494329 True 834 lncRNA 0.45 1 73055900 73056733

Neighbor

gene id symbol gene type direction distance location
LOC110524519 LOC106560231 coding upstream 3350 73007857 ~ 73052550 (+)
LOC118964641 NA coding upstream 15498 73037279 ~ 73040402 (+)
LOC110524516 LOC106560230 coding upstream 137169 72875185 ~ 72918731 (+)
LOC110524513 LOC106560217 coding upstream 204586 72833897 ~ 72851314 (+)
LOC110524511 LOC106560226 coding upstream 225320 72473117 ~ 72830580 (+)
LOC110522997 dhcr24 coding downstream 36917 73093650 ~ 73103407 (+)
LOC110524521 LOC106560235 coding downstream 56587 73113320 ~ 73118094 (+)
mdp1 mgdp1 coding downstream 69899 73126632 ~ 73129571 (+)
LOC110524525 sel1l3 coding downstream 134399 73191132 ~ 73202694 (+)
LOC110524528 cpeb2 coding downstream 429792 73486525 ~ 73513495 (+)
G436595 NA non-coding upstream 54903 73000778 ~ 73000997 (+)
G436592 NA non-coding upstream 57487 72998188 ~ 72998413 (+)
G436516 LOC106560227 non-coding upstream 194884 72858806 ~ 72861016 (+)
G436473 NA non-coding upstream 307399 72746163 ~ 72748501 (+)
G436462 NA non-coding upstream 353450 72701870 ~ 72702450 (+)
G436610 NA non-coding downstream 8767 73065500 ~ 73065729 (+)
G436613 NA non-coding downstream 16583 73073316 ~ 73073692 (+)
G436631 NA non-coding downstream 46900 73103633 ~ 73104048 (+)
G436630 NA non-coding downstream 48391 73105124 ~ 73106233 (+)
G436632 NA non-coding downstream 50378 73107111 ~ 73110492 (+)
G436588 NA other upstream 60165 72995499 ~ 72995735 (+)
G436403 NA other upstream 551465 72503460 ~ 72504435 (+)
ralgps2 LOC106613957 other upstream 1368731 71552653 ~ 71687963 (+)
G434829 NA other upstream 1757000 71298615 ~ 71298900 (+)
G434792 LOC106613943 other upstream 1832322 71218789 ~ 71223578 (+)
G437327 NA other downstream 399568 73456301 ~ 73495084 (+)
LOC110524560 LOC106560270 other downstream 1706471 74729349 ~ 74770168 (+)
G438719 NA other downstream 1715276 74772009 ~ 74776469 (+)
LOC110524571 LOC106560285 other downstream 2114571 75161317 ~ 75178287 (+)
G441903 NA other downstream 4211479 77268212 ~ 77268766 (+)

Expression


Co-expression Network