XLOC_023531 (tecrl2a)


Basic Information

Item Value
gene id XLOC_023531
gene name tecrl2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 28644418 ~ 28649360 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046536
AAAATAAAGCACTCAGAGATGATGACATCCTGCAGAATCTGCCTGCTGGGACCTCAGTGACCATGTATTTCAGAGACCTTGGTCCACAACTTGGATGGACAATGGTTTTTCTGGCAGAGTACATAGGACCTCTTCTGATATACCTCCTCTTCTACGTTCGTGTCCCATACATCTATAACCACAAATACACCTTTACCTCCAGCACCCATCCTGTGGTCAGTTTGGCTTGCGCTTGTCACTCGTTCCACTATATCAAGAGGCTATTTGAAACAATATTTGTACATCGGTTTTCTCATGGCACAATGCCTCTCAGAGCCATTGTAAAAAATTGTGTTTATTACTGGGGTTTTGCAGCTTGGTTAGCATACTACATCAACCATCCCCTCTACACACCTCCATCATATGGAGAGATACAGGTCAATTATGCGCTCATTATCTTTGTGTTGTGTGAGGCAGGTAATTTCTCCATCCACTGGTCATTGAACAGTTTAAAATGTGAAGGTTCAAAATGTCGGAGGTTCCCACATCCATCCAAAAACCCTTTCACGTGGCTCTTTTTCTTTGTATCATGCCCCAACTACACATATGAGgtGGGTGCTTGGGTGGGACTGTCCATTATGACCCAGTGTGTTCCAGTCAGATGACTCCAATTGACCTGCTCAAATGATCGTCTTCAAGCTTTCAGGCTTTCGTTTTCACTGGAAAGACTCTGACGTCCCGCCGGGCACCGGCTGCCCTCGGGTGCAACACAACGGCATCATCTTCTCCGGATTGGTGCTTGGCGAAATTCACAAATACCTACAGGGAGTGAAAGAAAGAGAGCGAGACTACATAAGGAGCCAAAAATGCCCTCGTTCCAGTGCATTTGTCAAATGCAGGCATAGAAGCAAATGGTGGTGgtcaaaagatggatggatgctcATGGCAGTTTCCTGACCCTGAACTGGGCTATTCTATTCTGTGCTGGTCTAGTTTAGGACATTTTCTCTCAGGAGAGAAGCGCCATCAAAATACTGCTAGACCTGTAATAGACAGCACCATTTTTGACCACTTAAAGGGAGTTATAAATTGTTCAAGCTTAAAGCGAGTTCACCcctaaaaaaatgctttatttaacaACCCCTGTGTTGTTTGacctactttattttttaaaccagaaAAGTAGAAGTTTTAAGAAGTACTGCTTGTGCTCTTCCGTGTAATGGCAGTAAATAGCAaccaaaattgtatttttttaaacaaagagaAATAACCCCAGGGAACATGCCATATATTCCCATCCATTATTCCATGAATTTATACTAATAACTAATTATACTAATTACATatctatagtatttttaaaaacacattagtatatattatttaatgaacATCATGACCTTTAC
>TCONS_00046537
TGTCACTCGTTCCACTATATCAAGAGGCTATTTGAAACAATATTTGTACATCGGTTTTCTCATGGCACAATGCCTCTCAGAGCCATTGTAAAAAATTGTGTTTATTACTGGGGTTTTGCAGCTTGGTTAGCATACTACATCAACCATCCCCTCTACACACCTCCATCATATGGAGAGATACAGGTCAATTATGCGCTCATTATCTTTGTGTTGTGTGAGGCAGGTAATTTCTCCATCCACTGGTCATTGAACAGTTTAAAATGTGAAGGTTCAAAATGTCGGAGGTTCCCACATCCATCCAAAAACCCTTTCACGTGGCTCTTTTTCTTTGTATCATGCCCCAACTACACATATGAGgtGGGTGCTTGGGTGGGACTGTCCATTATGACCCAGTGTGTTCCAGTTGCTCTCTTCACATTTGTTGGATTCATTCAAATGACTATCTGGGCTAAAGGAAAACATCAAATTTACGTCAGAGAGTTTAAGAACTATCCAAACCTCCGCATGCCTATCCTGCCATTTATTCTCTGA

Function

symbol description
tecrl2a Predicted to enable oxidoreductase activity. Predicted to be involved in very long-chain fatty acid biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0042761 very long-chain fatty acid biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-138 Predicted to enable oxidoreductase activity. Predicted to be involved in very long-chain fatty acid biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000089485

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046536 False 1388 mRNA 0.41 9 28644418 28649360
TCONS_00046537 True 531 mRNA 0.42 7 28646851 28648949

Neighbor

gene id symbol gene type direction distance location
XLOC_023530 NA coding downstream 83192 28552567 ~ 28561226 (-)
XLOC_023529 fbxo45 coding downstream 206585 28425900 ~ 28437833 (-)
XLOC_023528 nrros coding downstream 224974 28410963 ~ 28419444 (-)
XLOC_023527 prkag2a coding downstream 262981 28252520 ~ 28381437 (-)
XLOC_023526 cox4i1l coding downstream 398546 28231602 ~ 28245872 (-)
XLOC_023532 olfm3a coding upstream 36927 28686287 ~ 28711176 (-)
XLOC_023533 col11a1a coding upstream 114661 28764021 ~ 28893303 (-)
XLOC_023534 CT961047.1 coding upstream 322724 28972084 ~ 28974899 (-)
XLOC_023535 si:ch211-287n14.3 coding upstream 378068 29027428 ~ 29030690 (-)
XLOC_023536 CR388050.3 coding upstream 385264 29034624 ~ 29034740 (-)
XLOC_023665 dre-mir-735 misc upstream 9528601 38177961 ~ 38178027 (-)
XLOC_023524 NA non-coding downstream 529054 28081388 ~ 28115364 (-)
XLOC_023523 NA non-coding downstream 693214 27908955 ~ 27951204 (-)
XLOC_023521 NA non-coding downstream 867604 27756876 ~ 27776814 (-)
XLOC_023520 NA non-coding downstream 1153221 27489815 ~ 27491197 (-)
XLOC_023537 CR388050.1 non-coding upstream 403348 29052708 ~ 29052826 (-)
XLOC_023538 CR847965.1 non-coding upstream 824496 29473856 ~ 29473975 (-)
XLOC_023545 NA non-coding upstream 1271716 29921076 ~ 29922820 (-)

Expression


Co-expression Network