G436630


Basic Information

Item Value
gene id G436630
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73105124 ~ 73106233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU494355
ccctaagtctaaatattgctgttacattgcacaaccttcaatgttatgtcataattacgtacaattctggcaaattagttctcaatgagccaggcggcccaaactgttgcatataccctgactctgcatgcaatgaacgcaagagaagtaacACAATtgcacctggttaatattgcctgctaacctttcttttagctaaacatgcaggtttaaaaatatatacttctgtgtattgattttaagaaaggcattgatgtttatggttaggtacacgttggagcaacgacagtcctttttcgcgaatgcgcaccgtatcgattatatgcaacgcaggacacgctagataaactagtaatatcatcaaccatgtgtagttataactagtgattatgattcattgtttttataagataagtttaatgctagctagcaatttaccttggcttcttactgtatttgcgtaacaggcaggctcctcgtgaggcaggtggttagagcgttggactagttaaccgtaaggttgcaagattgaatccctgaactgacgaggtaaaagtctgtcgttctgcccctgaacaaggcagttaacccaccgttcctaggcagtcatcgaaaataagaatgtattcttaactgacttgcctagttaaataaaggtgtaaaaaaatatataataataataatttgcaaAATCGTCATctaaaaataccgatttccgattgttatgaacttgaaatcggccctaattaatcagctattccgatgaatcggtcgacctctactctgtacgcccatgtagatattccattaaaaatgagC
>TU494357
atataccctgactctgcatgcaatgaacgcaagagaagtaacACAATtgcacctggttaatattgcctgctaacctttcttttagctaaacatgcaggtttaaaaatatatacttctgtgtattgattttaagaaaggcattgatgtttatggttaggtacacgttggagcaacgacagtcctttttcgcgaatgcgcaccgtatcgattatatgcaacgcaggacacgctagataaactagtaatatcatcaaccatgtgtagttataactagtgattatgattcattgtttttataagataagtttaatgctagctagcaatttaccttggcttcttactgtatttgcgtaacaggcaggctcctcgtgaggcaggtggttagagcgttggactagttaaccgtaaggttgcaagattgaatccctgaactgacgaggtaaaagtctgtcgttctgcccctgaacaaggcagttaacccaccgttcctaggcagtcatcgaaaataagaatgtattcttaactgacttgcctagttaaataaaggtgtaaaaaaatatataataataataatttgcaaAATCGTCATctaaaaataccgatttccgattgttatgaacttgaaatcggccctaattaatcagctattccgatgaatcggtcgacctctactctgtacgcccatgtagatattccattaaaaatgagCCATTTCCAGCTgcaattgtcatttacaacattaacagtgtctacactgtatttttgttattttaatggacaaaatgttttgcttttctttaaaaaaacaaggacatttctaattgaccccaaacttttgaacagtagtgtacaacttctgacccctaaccccaacacctGCCTGTTCTGACCCCCAACCCTAATCTGGTTATTTCTACTGCCTGGCAGAGAGAAAGGAGATCACTGCTATTGTCCACAAATGTTTTTGTTGGTGTATGATGATAATAAAGTTGGTTTTGTC
>TU494358
tatgcaacgcaggacacgctagataaactagtaatatcatcaaccatgtgtagttataactagtgattatgattcattgtttttataagataagtttaatgctagctagcaatttaccttggcttcttactgtatttgcgtaacaggcaggctcctcgtgaggcaggtggttagagcgttggactagttaaccgtaaggttgcaagattgaatccctgaactgacgaggtaaaagtctgtcgttctgcccctgaacaaggcagttaacccaccgttcctaggcagtcatcgaaaataagaatgtattcttaactgacttgcctagttaaataaaggtgtaaaaaaatatataataataataatttgcaaAATCGTCATctaaaaataccgatttccgattgttatgaacttgaaatcggccctaattaatcagctattccgatgaatcggtcgacctctactctgtacgcccatgtagatattccattaaaaatgagCCATTTCCAGCTgcaattgtcatttacaacattaacagtgtctacactgtatttttgttattttaatggacaaaatgttttgcttttctttaaaaaaacaaggacatttctaattgaccccaaacttttgaacagtagtgtacaacttctgacccctaaccccaacacctGCCTGTTCTGACCCCCAACCCTAATCTGGTTATTTCTACTGCCTGGCAGAGAGAAAGGAGATCACTGCTATTGTCCACAAATGTTTTTGTTGGTGTATGATGATAATAAAGTTGGTTTTGTC
>TU494360
agataagtttaatgctagctagcaatttaccttggcttcttactgtatttgcgtaacaggcaggctcctcgtgaggcaggtggttagagcgttggactagttaaccgtaaggttgcaagattgaatccctgaactgacgaggtaaaagtctgtcgttctgcccctgaacaaggcagttaacccaccgttcctaggcagtcatcgaaaataagaatgtattcttaactgacttgcctagttaaataaaggtgtaaaaaaatatataataataataatttgcaaAATCGTCATctaaaaataccgatttccgattgttatgaacttgaaatcggccctaattaatcagctattccgatgaatcggtcgacctctactctgtacgcccatgtagatattccattaaaaatgagCCATTTCCAGCTgcaattgtcatttacaacattaacagtgtctacactgtatttttgttattttaatggacaaaatgttttgcttttctttaaaaaaacaaggacatttctaattgaccccaaacttttgaacagtagtgtacaacttctgacccctaaccccaacacctGCCTGTTCTGACCCCCAACCCTAATCTGGTTATTTCTACTGCCTGGCAGAGAGAAAGGAGATCACTGCTATTGTCCACAAATGTTTTTGTTGGTGTATGATGATAATAAAGTTGGTTTTGTC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU494355 False 819 lncRNA 0.38 1 73105124 73105942
TU494357 False 1000 lncRNA 0.38 1 73105234 73106233
TU494358 False 789 lncRNA 0.38 1 73105445 73106233
TU494360 True 702 lncRNA 0.38 1 73105532 73106233

Neighbor

gene id symbol gene type direction distance location
LOC110522997 dhcr24 coding upstream 1717 73093650 ~ 73103407 (+)
LOC110524519 LOC106560231 coding upstream 52574 73007857 ~ 73052550 (+)
LOC118964641 NA coding upstream 64722 73037279 ~ 73040402 (+)
LOC110524516 LOC106560230 coding upstream 186393 72875185 ~ 72918731 (+)
LOC110524513 LOC106560217 coding upstream 253810 72833897 ~ 72851314 (+)
LOC110524521 LOC106560235 coding downstream 7087 73113320 ~ 73118094 (+)
mdp1 mgdp1 coding downstream 20399 73126632 ~ 73129571 (+)
LOC110524525 sel1l3 coding downstream 84899 73191132 ~ 73202694 (+)
LOC110524528 cpeb2 coding downstream 380292 73486525 ~ 73513495 (+)
LOC110524529 LOC106560251 coding downstream 408710 73514943 ~ 73524397 (+)
G436631 NA non-coding upstream 1076 73103633 ~ 73104048 (+)
G436613 NA non-coding upstream 31432 73073316 ~ 73073692 (+)
G436610 NA non-coding upstream 39395 73065500 ~ 73065729 (+)
G436606 NA non-coding upstream 48391 73055900 ~ 73056733 (+)
G436595 NA non-coding upstream 104127 73000778 ~ 73000997 (+)
G436632 NA non-coding downstream 878 73107111 ~ 73110492 (+)
G436556 LOC106560237 non-coding downstream 26126 73132359 ~ 73133674 (+)
G436640 LOC100194696 non-coding downstream 73403 73179636 ~ 73180778 (+)
G436667 NA non-coding downstream 75601 73181834 ~ 73182158 (+)
G437291 NA non-coding downstream 315929 73422162 ~ 73422590 (+)
G436588 NA other upstream 109389 72995499 ~ 72995735 (+)
G436403 NA other upstream 600689 72503460 ~ 72504435 (+)
ralgps2 LOC106613957 other upstream 1417955 71552653 ~ 71687963 (+)
G434829 NA other upstream 1806224 71298615 ~ 71298900 (+)
G434792 LOC106613943 other upstream 1881546 71218789 ~ 71223578 (+)
G437327 NA other downstream 350068 73456301 ~ 73495084 (+)
LOC110524560 LOC106560270 other downstream 1656971 74729349 ~ 74770168 (+)
G438719 NA other downstream 1665776 74772009 ~ 74776469 (+)
LOC110524571 LOC106560285 other downstream 2065071 75161317 ~ 75178287 (+)
G441903 NA other downstream 4161979 77268212 ~ 77268766 (+)

Expression


Co-expression Network