XLOC_023532 (olfm3a)


Basic Information

Item Value
gene id XLOC_023532
gene name olfm3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 28686287 ~ 28711176 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046538
ATTCACTCCCCAACAACGCACCTCAACAAGTTCACGTTTGAAATAATCAAATGATGTCACATCCGCTGTTGAGATCGCCTTGGTAGTGTTGGATGTTCTTCAGTGTCTTCTCTCATGCGCGCGGTCGTAACTTTGGACAGCGCGCGCTCAGTATTGGCTGCACGCGGGAGCTCGCGCGGCGGAGCAGCTCGGTAATGAATGTGGATCTATCCGCCCTGTACTGCTCGGGCATCATCTGCCACGCCGAGAACGCGATATTAACGCCAGAAAAGTGCAATAGAGCAGTGACAGCATGATCCTTCTGTTCGGCGCATTAAATCCCCTGCTTTTCCTCATTGTCTTCGGACTGTATCCATCCATGaCGATAGGTCCTAAGGAAGGATGGCAGGTGTACAGTTCGGCACAGGATGCAGACGGACGCTGTATCTGCACTGTGGTCGCACCGGAACAAAACCTCTGCTCCAGGGATGCCAAGAGCCGACAGCTCCGACAGCTGCTGGAGAAGGTGCAGAACATGTCTCAGTCCATTGAAGTCCTCAATCTGCGCACACAGCGTGATTTCCAGTATGTCATGAAAATGGAAAACCAAATGAAAGGCTTACGGACCAAGTTCCGGCAAATTGAAGAGGACAGGAAAACTATAATGGCCAGAAACTTCAAGGAGCTAAAGGATCGTATGGATGAACTCCAGCCATTGATTCCTGTGCTGGAGCAGTACAAAACAGATGCTAAGCTGATCTCTCAGTTCAAAGAGGAAATCAGGAATCTGTCTGCGGTTCTGACGGGCATCCAGGAAGAGCTGGGAGCTTATGACTACGAGACCCTCTATCAGAGAGTCCTCAGCCTAGACAGCCGTCTGCGAAACTGCATGAGCAAACTCACTTGTGGTAAATTAATGAAAATCACAGGGCCTGTGACTATAAAAACATCTGGAACAAGGTTTGGCGCTTGGATGACCGACCCGTTTGCTTCTCCAAGAAACAACCGGGTTTGGTATATGGACACTTACACCAACAGCAAGGTGGTTCGAGAGTATAAAAGCATTGACGACTTTGTCGCCGGCCAAGAATCGCGTACCTATTACCTCCCCTTCAAATGGGCCGGAACCAACCACGTGGTCTACAATGGCTCTCTGTACTACAACAAGGAGCAGAGTAACATCATTGTCAAATACAGCTTCGATACCGGACGGGTTCTCACCCAACGTGCCTTGGAGTACGCCGGATTTCACAACGTCTACCCCTACACCTGGGGAGGCTTTTCGGACATCGACCTCATGGCGGATGAGCTGGGTTTGTGGGCTGTATATGCCACCAATCAGAATGCAGGAAACATTGTGATTTCGCAGTTGGAGCCGCAGACGCTGGAGGTTCTCCAGACGTGGAACACGGAATATTCCAAAAGGAACGCAGGCGAGTCTTTTATGATCTGCGGCACGCTCTACATCACCAATTCCCACTTGACTGGAGCCAAGGTGTATTATTCCTACAATACAAAGACCTCGACGTACGAATACATGGACATCCCATTCCACAACCAGTACTTTCACATCTCAATGCTCGACTACAATGCTCGAGAACGAGCGCTTTACGCTTGGAACAACGGACATCAGGTCATTTTTAACGTCACGCTTTTTCATGTCATCAAAACCGAAGATGATTCCTAATGGACTTGCGGATGATTTGGTTTTCTACTCATTCATGGTTCTTTTTCCAAAGTTAAACAGACATTCTTGCCTTTTTATCACTGTTTGAGTCTGAATGATAAGACACGAAGACTTAATTATGAAACGCCATTAAGAACTGAGTTCTTTTATTCATCTGCTCATAGCTGCTCTGAAAGTTAGGCCTTACTCGCAATATTTTCCAGACGGATTGCTCTACTGCATGAATGTCTGATTATTTCGCCATTTGTTATTTGTGATCTTTGTATATTAAGAAATCCCATTTTCTTATATAGTGACGTGCTTTTGGCGGCTTTAATTTCTCCAGACTTCTCTGGTGATCTCCTGTTGTGTCAAGTTTAGTTGTACAAACTGTAGAGCTCTGAATATGAAGCTATGTAAATGATTGTAACATTCATTGTCACTGTGAGAGGAaagattttatattaaatctagAAAGAACAACAATAAATCAACGTGAACATAACCACAAATCTACATCCATAAACGTAAACAACAGCACGGGAAGGAGCTGTGTGCGACACAGAGCAATTTTGTCAGCATCCAACCTGAATTCACAGGGGTTATAATGAGGTCATTTGCTGATGATTGTGACAAGCCCGACCGAGGCTGCGTTCACATTCATTTACGGCCAGCCCTCCTCACTTGATGACTTTGAATGCTGTCCTTTGGCATTTTCAATCAAGATCAAGGGCACGGGAGCCGGGAGGGGATGATTCCAACTCCTCTTGGCAATTTCCTCTCCCTTCATGTCTCTGTCAAGCGTCTGCTTGGGCACTGGGAATTTAAATGCACTTTTACCGTCATCAATTCAGCACTGGGAATAGATCACCCACAGGGATTTACTACTGCTGTTTCCTACATCGCACCAAGTATATTTCTTATGAATATTTGCTGCTTGCAACACAGTCTAGCAGAATGTGAAAGTTATTGTGGAAGTTCTATTGCCTATATAATATTACAGATTTTATAATCCTGTAACAAAGTATATCTATACATGGtcatttattaattactttttttattgtaatttgtgAGTAGCTTGTAACAAGACTTAAAATCACAACTTGTTTTTTGTAAATGTCTTCAGTGAACCGACCACAAGAATCAACTGTGAACAAATCCGATCACACTGTTCACTGAAATGAAATACCTCAAAGCTATAATTTACAAGTAATCTGCTTTAGAAATTtttccacacaaaaaaaataaataaataaaaaaaa

Function

symbol description
olfm3a Predicted to be located in extracellular region and synapse. Orthologous to human OLFM3 (olfactomedin 3).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-11 Predicted to be located in extracellular region and synapse. Orthologous to human OLFM3 (olfactomedin 3).

Ensembl:

ensembl_id ENSDARG00000071493

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046538 True 2910 mRNA 0.44 6 28686287 28711176

Neighbor

gene id symbol gene type direction distance location
XLOC_023531 tecrl2a coding downstream 36927 28644418 ~ 28649360 (-)
XLOC_023530 NA coding downstream 125061 28552567 ~ 28561226 (-)
XLOC_023529 fbxo45 coding downstream 248454 28425900 ~ 28437833 (-)
XLOC_023528 nrros coding downstream 266843 28410963 ~ 28419444 (-)
XLOC_023527 prkag2a coding downstream 304850 28252520 ~ 28381437 (-)
XLOC_023533 col11a1a coding upstream 52845 28764021 ~ 28893303 (-)
XLOC_023534 CT961047.1 coding upstream 260908 28972084 ~ 28974899 (-)
XLOC_023535 si:ch211-287n14.3 coding upstream 316252 29027428 ~ 29030690 (-)
XLOC_023536 CR388050.3 coding upstream 323448 29034624 ~ 29034740 (-)
XLOC_023537 CR388050.1 coding upstream 341532 29052708 ~ 29052826 (-)
XLOC_023665 dre-mir-735 misc upstream 9466785 38177961 ~ 38178027 (-)
XLOC_023524 NA non-coding downstream 570923 28081388 ~ 28115364 (-)
XLOC_023523 NA non-coding downstream 735083 27908955 ~ 27951204 (-)
XLOC_023521 NA non-coding downstream 909473 27756876 ~ 27776814 (-)
XLOC_023520 NA non-coding downstream 1195090 27489815 ~ 27491197 (-)
XLOC_023538 CR847965.1 non-coding upstream 762680 29473856 ~ 29473975 (-)
XLOC_023545 NA non-coding upstream 1209900 29921076 ~ 29922820 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000082_01330784_01334768 OLFM3, OLFM3A coding CI01000082 null 1330253 ~ 1335190 (-)