G436640 (LOC100194696)


Basic Information

Item Value
gene id G436640
gene name LOC100194696
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73179636 ~ 73180778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU494372
CCTGACGCACACAGTTCATATCATATCCATACCTGGTCCAGTCTTGTCCCAGCCACACACCATGGTTCCCATGCTAAGGCCCATGCCTTTGTACTGGTACACCATGTTGGCCAGCAGTTTTGAGGCGGCTGCCACTGAGATGCGTTCCTTGTTGCGGAGCTCGTAGACGCGGCACTGGCGGGCCAGCAAGCGCTCCCAGAAACTGCAGTCAGCTGCACCTCCAGCCATGGTGCCCAGCAGGTAGGGGTTGATCTCTATTACCTTCTTCACTGTCTGGGAGGCGATGTAGGAGCCAGCTGTGGCTCTGGAGTCCACAGCCATGAAGGAATTCAATCTTTCTATCTGGTCCATCTTCGTTAGAGCACGAAGTGCTCAGAGCGAAAGAGAGTCGATCTCCTCCAACAGACTCCAAACCCAACTCTGCTTCATACAAACCACTGGCGAAGCCATGACGCTGGCGACCATAGTTGGAAAAATCTACTGACTCACTCTGCAACACACTAGCAAGCGCCATCTTTG

Function

NR:

description
proteasome subunit beta type-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU494372 True 519 lncRNA 0.54 2 73179636 73180778

Neighbor

gene id symbol gene type direction distance location
mdp1 mgdp1 coding upstream 50065 73126632 ~ 73129571 (+)
LOC110524521 LOC106560235 coding upstream 61542 73113320 ~ 73118094 (+)
LOC110522997 dhcr24 coding upstream 76229 73093650 ~ 73103407 (+)
LOC110524519 LOC106560231 coding upstream 127086 73007857 ~ 73052550 (+)
LOC110524525 sel1l3 coding downstream 10354 73191132 ~ 73202694 (+)
LOC110524528 cpeb2 coding downstream 305747 73486525 ~ 73513495 (+)
LOC110524529 LOC106560251 coding downstream 334165 73514943 ~ 73524397 (+)
cc2d2a cc2d2a coding downstream 344519 73525297 ~ 73557332 (+)
nek1 NA coding downstream 402604 73583382 ~ 73600500 (+)
G436556 LOC106560237 non-coding upstream 45962 73132359 ~ 73133674 (+)
G436632 NA non-coding upstream 69144 73107111 ~ 73110492 (+)
G436630 NA non-coding upstream 73403 73105124 ~ 73106233 (+)
G436631 NA non-coding upstream 75588 73103633 ~ 73104048 (+)
G436613 NA non-coding upstream 105944 73073316 ~ 73073692 (+)
G436667 NA non-coding downstream 1056 73181834 ~ 73182158 (+)
G437291 NA non-coding downstream 241384 73422162 ~ 73422590 (+)
G437302 NA non-coding downstream 249846 73430624 ~ 73430918 (+)
G437303 LOC106560250 non-coding downstream 250817 73431595 ~ 73433683 (+)
G437312 NA non-coding downstream 263368 73444146 ~ 73444404 (+)
G436588 NA other upstream 183901 72995499 ~ 72995735 (+)
G436403 NA other upstream 675201 72503460 ~ 72504435 (+)
ralgps2 LOC106613957 other upstream 1492467 71552653 ~ 71687963 (+)
G434829 NA other upstream 1880736 71298615 ~ 71298900 (+)
G434792 LOC106613943 other upstream 1956058 71218789 ~ 71223578 (+)
G437327 NA other downstream 275523 73456301 ~ 73495084 (+)
LOC110524560 LOC106560270 other downstream 1582426 74729349 ~ 74770168 (+)
G438719 NA other downstream 1591231 74772009 ~ 74776469 (+)
LOC110524571 LOC106560285 other downstream 1990526 75161317 ~ 75178287 (+)
G441903 NA other downstream 4087434 77268212 ~ 77268766 (+)

Expression


Co-expression Network