Fish Transcriptome and Expression Database

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model fish

XLOC_023538 (CR847965.1)

Basic Information

Item	Value
gene id	XLOC_023538
gene name	CR847965.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007135.7
NCBI id	CM002908.2
chromosome length	42172926
location	29473856 ~ 29473975 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046553
TgttgccagcagctagctctctgcaacacTCACACGGGTTGCCCACTGAAGATAAGCAGGAGCGCTTGCCAGgccagtacttggatgggagaccacatgggaaagctagactgacaccgg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000115418

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00046553	True	120	rRNA	0.57	1	29473856	29473975

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_023537	CR388050.1	coding	downstream	421030	29052708 ~ 29052826 (-)
XLOC_023536	CR388050.3	coding	downstream	439116	29034624 ~ 29034740 (-)
XLOC_023535	si:ch211-287n14.3	coding	downstream	443166	29027428 ~ 29030690 (-)
XLOC_023534	CT961047.1	coding	downstream	498957	28972084 ~ 28974899 (-)
XLOC_023533	col11a1a	coding	downstream	580553	28764021 ~ 28893303 (-)
XLOC_023539	vav3a	coding	upstream	89792	29563767 ~ 29586082 (-)
XLOC_023540	si:ch73-383g2.1	coding	upstream	148370	29622345 ~ 29729799 (-)
XLOC_023541	wu:fj05g07	coding	upstream	284297	29758272 ~ 29777413 (-)
XLOC_023542	aglb	coding	upstream	309663	29783638 ~ 29868151 (-)
XLOC_023543	si:dkeyp-88h4.2	coding	upstream	386794	29860769 ~ 29863372 (-)
XLOC_023665	dre-mir-735	misc	upstream	8703986	38177961 ~ 38178027 (-)
XLOC_023530	NA	non-coding	downstream	912630	28552567 ~ 28561226 (-)
XLOC_023524	NA	non-coding	downstream	1358492	28081388 ~ 28115364 (-)
XLOC_023545	NA	non-coding	upstream	447101	29921076 ~ 29922820 (-)
XLOC_023550	NA	non-coding	upstream	855492	30329467 ~ 30376218 (-)
XLOC_023552	NA	non-coding	upstream	1429468	30903443 ~ 30911865 (-)
XLOC_023553	NA	non-coding	upstream	1453713	30927688 ~ 30972863 (-)
XLOC_023554	NA	non-coding	upstream	1566045	31040020 ~ 31081433 (-)

Expression

Co-expression Network