G438409


Basic Information

Item Value
gene id G438409
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74440850 ~ 74445900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU496404
GTCAGTGGGGGCTGTGCTCAGTTCAGTATGACGTCAGTGGGGGCTGTGCTCAGTTAAGTATATTGTCCGTtggtgttgtgtttagttcagtatgacgTCAGTGGGGGTGTGTTCAGTTCAGTATGACgtcagtgggggttgtgtttagtttctTATGATGTCTGTGGGGGTTGTGTATAGTTCAGTATGACAACAGTGGGGATTGTGATTAGTTAAGTATGATGTCAGTGGGGTTGTGAATAGTTCAGTATGATGTCAGTTGGGGTTGTGAATAGTTCAGTATGATgtcagtgggggttgtgtttgTTCAGTCTGACGTCAGTGGGGATTGTTTTTTGTTGAGAGAAATgtcagtgggggttgtgtttagttcagtattaaATCAGtgagggttgtgtttagttcagtaagACGTCAgcggggttgtgtttagttcagaatTAAATCAGTGAGGGTTGTGTATTGTTCAGTATGAATTCAGTGGGGTTGTGCTCAGTTCAGTATGAtgtcagtggggttgtgtttagGTCAGTGTGATGTCAGTCGGGGTTATGATTAGTTCAGTATGAtgtcagtggggttgtgtttagGTCAGTGTGATGTCAGTCGGGGTTATGATTAGTTCAGTATGATGTCAGTGTGGGTTGTATTTAGTTCAGTATGATGTTAGTTATGGTTGTATTTAGTTCAGTATGATGTTAGTGATGGTTGTATTTAGTTCAGTATGATGTTCGTGGGGGTTGTGTTCAGTTCAGAATTATGTCAGTGAGAGTTGTGTATAGTTCAGTATTAAGTCAGTGAGGGTTGCATTTAGTTCAGTATGAAATCAGTGGGGGTTATGTTTAGTTTAGTATGATGTCAGTGGGGGATGATTTTCGTTCAGTATGACGTTAGCGGGTGTTGTGTTCAGCTCAGAATGATGTCAGTGGGGGTTGTGTTAAGTTCACTATGACATCAgttggggttgtgtttagttcagtttgACATCAGTGGGGTTtttgtttagttcagtatgaagtCAGTGGTGTTGTGTTTTGTTCAGTATGACGTCAGcaggggttgtgtttagttcagtatgacgTCAGCAGGGGTtctgtttagttcagtatgatgtCAGTGGCGGTTGTTTTTAGTTCAGTATGATGTCAGTGGGGGTTGTGATTAGTTCAGTATGTCGTCAGTGGAGGTTGTGTTCAGTCCAGTATAATGTCAGTGGGGGTtatgtttagttcagtatgaagtcagtggggttgtgtttagtttagTATGTCGTCAGTGGGGTTTGTGGTTAGTTCAGTAAGACAGCCgtgtgggttgtgtttagttcagtatgatgtcagtgggggttgtgtttagttcagtatgatgtCTGTGGGGGTTGtgtatagttcagtataacaACAGTGGGGATTGTGAATAGTTCAGTATGATGTCAGTGGGGACTGTGCTCAGTTCAGTATGACGTCAGTGGGGGCTGTGCTCAGTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU496404 True 1488 lncRNA 0.43 2 74440850 74445900

Neighbor

gene id symbol gene type direction distance location
LOC110524553 LOC106560266 coding downstream 86757 74122303 ~ 74354093 (-)
LOC110523002 LOC106560265 coding downstream 365259 74062228 ~ 74075591 (-)
sgcb LOC106560263 coding downstream 424812 74009042 ~ 74016038 (-)
LOC110524549 LOC106560259 coding downstream 432281 73993983 ~ 74008569 (-)
ociad2 ocad2 coding downstream 468720 73969591 ~ 73972130 (-)
LOC118964644 kdr coding upstream 361306 74807206 ~ 74820307 (-)
LOC100135915 LOC106560272 coding upstream 402930 74848830 ~ 74891311 (-)
LOC110522887 LOC106560273 coding upstream 455657 74901557 ~ 74911349 (-)
LOC110523004 NA coding upstream 515477 74961377 ~ 74968484 (-)
LOC110524565 LOC106560282 coding upstream 580708 75026608 ~ 75036101 (-)
G438307 NA non-coding downstream 223404 74209798 ~ 74217446 (-)
G437992 NA non-coding downstream 330613 74110008 ~ 74110237 (-)
G437991 NA non-coding downstream 331183 74109443 ~ 74109667 (-)
G437954 NA non-coding downstream 370971 74069535 ~ 74069879 (-)
G437953 NA non-coding downstream 372423 74067952 ~ 74068427 (-)
G438410 NA non-coding upstream 203 74446103 ~ 74450669 (-)
G438424 NA non-coding upstream 23205 74469105 ~ 74469898 (-)
G438447 NA non-coding upstream 70061 74515961 ~ 74516300 (-)
G438452 NA non-coding upstream 74926 74520826 ~ 74521029 (-)
G438553 NA non-coding upstream 151264 74597164 ~ 74597493 (-)
LOC110524526 LOC106584218 other downstream 1030511 73370439 ~ 73421683 (-)
G437079 NA other downstream 1293722 73146358 ~ 73147128 (-)
G437074 NA other downstream 1315812 73122112 ~ 73125038 (-)
G437054 NA other downstream 1345514 73094794 ~ 73095336 (-)
G436873 NA other downstream 1664982 72774561 ~ 72775868 (-)
G439002 NA other upstream 419359 74865259 ~ 74927797 (-)
G439594 NA other upstream 817573 75263473 ~ 75265403 (-)
G439788 LOC106560295 other upstream 1125349 75571249 ~ 75575569 (-)
G441168 glrx2 other upstream 2140558 76586458 ~ 76590370 (-)

Expression


Co-expression Network