G438628


Basic Information

Item Value
gene id G438628
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74698822 ~ 74699097 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU496641
aaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggatggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccagatgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggagtgatgg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU496641 True 276 lncRNA 0.41 1 74698822 74699097

Neighbor

gene id symbol gene type direction distance location
LOC110523003 LOC106560269 coding upstream 36373 74638146 ~ 74662449 (+)
LOC110522886 pdx1 coding upstream 68149 74628427 ~ 74630673 (+)
LOC110524557 LOC106560354 coding upstream 74233 74623051 ~ 74624589 (+)
LOC110524555 NA coding upstream 315140 74360777 ~ 74383682 (+)
LOC118964643 NA coding upstream 341850 74354175 ~ 74356972 (+)
LOC110524560 LOC106560270 coding downstream 30252 74729349 ~ 74770168 (+)
LOC110524561 LOC106560271 coding downstream 136351 74835448 ~ 74841452 (+)
LOC110524562 exoc1 coding downstream 233053 74932150 ~ 74946070 (+)
LOC110523005 LOC106560277 coding downstream 272966 74972063 ~ 75017851 (+)
LOC110524564 LOC106560280 coding downstream 332692 75031789 ~ 75041377 (+)
G438623 NA non-coding upstream 6814 74691723 ~ 74692008 (+)
G438595 NA non-coding upstream 35194 74662520 ~ 74663628 (+)
G438599 NA non-coding upstream 62893 74635628 ~ 74635929 (+)
G438596 NA non-coding upstream 67106 74631486 ~ 74631716 (+)
G438582 NA non-coding upstream 77730 74620880 ~ 74621092 (+)
G438807 NA non-coding downstream 202056 74901153 ~ 74902477 (+)
G438831 NA non-coding downstream 228956 74928053 ~ 74928567 (+)
G438836 NA non-coding downstream 251191 74950288 ~ 74950686 (+)
G438841 NA non-coding downstream 266271 74965368 ~ 74965605 (+)
G438904 NA non-coding downstream 397870 75096967 ~ 75099072 (+)
G437327 NA other upstream 1203738 73456301 ~ 73495084 (+)
G436588 NA other upstream 1703087 72995499 ~ 72995735 (+)
G436403 NA other upstream 2194387 72503460 ~ 72504435 (+)
ralgps2 LOC106613957 other upstream 3011653 71552653 ~ 71687963 (+)
G434829 NA other upstream 3399922 71298615 ~ 71298900 (+)
G438719 NA other downstream 72912 74772009 ~ 74776469 (+)
LOC110524571 LOC106560285 other downstream 472207 75161317 ~ 75178287 (+)
G441903 NA other downstream 2569115 77268212 ~ 77268766 (+)
G442273 NA other downstream 2859233 77558330 ~ 77583227 (+)

Expression


Co-expression Network