G438952


Basic Information

Item Value
gene id G438952
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74770467 ~ 74771392 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU496996
ctaaaatatatacaaaatcaATTAAAGCCCCATACTTTCACAGAAAAATCTACAGACTAAACACAACATTCAGGGGATTGTTTTAAAGgagtacacacaaatacacacatgtaAGCAtgaacacatgcacgcacactcgTACGAatgcaaacatgcacacacacaccatatcatgtGTATTAATTACATATTGCATCGTGTTGGCACTTGGCCCTTGTAACTAGATTATCCCAGAGAAAAAGCAATGGAACTGCCATGATACAATTGGGTGTTTGTTTTTCCATCTTGGACAGAAGTATAATTTACCAGAGGCTATTAGAAAACAAAATGAGACTATTGTGCTGGAATGAGGACCTGGACAGAATTCAAaccttactgagagacagagggtgagatGGGAGAGGGATAGAGCAAGAAAAAAAGCTTTCAATACACTGCGTCTAATCGGACTGTATTGGGAGAGTAATAACATATGAAAATCTCAACTGGGCCatatacagatgtaagatcttaatttgatcaccctgttgcaggacatTTCATATTAGACCAACAGTACAGTAGCACAAGTGTAAGTAGCTTTTGCTGTAAAAGTCCAGTCTCAGTCTCGCAATGATCTTCAAATAATGTGATGAAATATTACAGAAAagattcttctccctctctcagctgctTTTTACTGTAAGCGACCACTCTGTCTCACAAACGTATTCAACCAACCATTCTGCTTCAATGGTGGGATTTCCTGTCCCTCTTATCAGATACTGTAGATGCTAGAACAATGGGCTCAGCCCACACAGTGACACGcactccgtctgtctgtccaccGGCCTGGCCTGCTGGACAAGCCACTGTCCTGGCAGCGTTCCCCTTCAGCCAGATGTCCCAAGCTGGACCCAAGCCAAAGACCCTGACAATTCTGgagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU496996 True 926 lncRNA 0.42 1 74770467 74771392

Neighbor

gene id symbol gene type direction distance location
LOC110524556 LOC106560268 coding downstream 269362 74405846 ~ 74501105 (-)
LOC110524553 LOC106560266 coding downstream 416374 74122303 ~ 74354093 (-)
LOC110523002 LOC106560265 coding downstream 694876 74062228 ~ 74075591 (-)
sgcb LOC106560263 coding downstream 754429 74009042 ~ 74016038 (-)
LOC110524549 LOC106560259 coding downstream 761898 73993983 ~ 74008569 (-)
LOC118964644 kdr coding upstream 35814 74807206 ~ 74820307 (-)
LOC100135915 LOC106560272 coding upstream 77438 74848830 ~ 74891311 (-)
LOC110522887 LOC106560273 coding upstream 130165 74901557 ~ 74911349 (-)
LOC110523004 NA coding upstream 189985 74961377 ~ 74968484 (-)
LOC110524565 LOC106560282 coding upstream 255216 75026608 ~ 75036101 (-)
G438696 NA non-coding downstream 61525 74708660 ~ 74708942 (-)
G438695 NA non-coding downstream 64537 74705707 ~ 74705930 (-)
G438692 NA non-coding downstream 65669 74704545 ~ 74704798 (-)
G438689 NA non-coding downstream 67059 74703104 ~ 74703408 (-)
G438669 NA non-coding downstream 86421 74683836 ~ 74684046 (-)
G438957 NA non-coding upstream 3807 74775199 ~ 74776202 (-)
G438959 NA non-coding upstream 64102 74835494 ~ 74836105 (-)
G438951 NA non-coding upstream 72644 74844036 ~ 74846616 (-)
G439012 exoc1 non-coding upstream 160779 74932171 ~ 74934342 (-)
LOC110524526 LOC106584218 other downstream 1360128 73370439 ~ 73421683 (-)
G437079 NA other downstream 1623339 73146358 ~ 73147128 (-)
G437074 NA other downstream 1645429 73122112 ~ 73125038 (-)
G437054 NA other downstream 1675131 73094794 ~ 73095336 (-)
G436873 NA other downstream 1994599 72774561 ~ 72775868 (-)
G439002 NA other upstream 93867 74865259 ~ 74927797 (-)
G439594 NA other upstream 492081 75263473 ~ 75265403 (-)
G439788 LOC106560295 other upstream 799857 75571249 ~ 75575569 (-)
G441168 glrx2 other upstream 1815066 76586458 ~ 76590370 (-)

Expression


Co-expression Network