G438951


Basic Information

Item Value
gene id G438951
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74844036 ~ 74846616 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU496994
agaaatgttttggtacccttccccagatctgtacctcgacacaatcctgtctcggagctctatggacaattcctttgacctcatggcttggtttttgctctgacatgcactgtcaactgtgggaccttataaagacaggtatttgcctttctaaatcatgtccagtcaattgaatttactacaggtgagcttcaatcaagttgtagaaacagcaagggtgatcaatggaaacaggatgcacctgatctcaatttcgagtctcatagcaaagggtctgaataattgtatttttaatacatttgtatgtGCTTTGTTAttttggggtgttgtgtgtagattgatcaggaaaaaaatatgtaatacattttagaaaaagcctgtaatgtaataaaatgtggattaagtcaaggggtctgaatactttccaaatgcacagtaTGTTCATGTACCTCATGGCAAAACAGTCCCAGGCCCTTGTGTTTACAGTGCAGTAAGTCAGTCTGCTCGTCTCTGCTTTTTGAAATTCACGCTTAGTGCAAATGGTGGTCCCTGCTGCTAGGTTATTGGTGGTGCATTGCCATGTACAGCAGAACTTAGCTGGTACTTCTTATAACCACAAAGTTATTGTCTTGCCAGTAATGCATATCGACACAGATTTATTCAACACGTTGTACCGAAACTGTCCGTGACTCTTACGTAAAGTTGTTTGGTCACTGTGATTTTATAATATTTTTTGGGACACAAAGTAAACCTGTGCCACCAATGGCGTGATAAACCTTACAGCTACCAGTACCGGGTCAGGCAGTGCAATACTTGAATGAATGTAATTCAATATCAAACGCTAACATAGCTGTCTGAAGATGGTCATGCATAAATAAATGAATAGACGAGGAGGGCTTAGTTAAAAATATTTTAACAGAAAACAAACCTCAGATTTTAAGATTATTTTTCTATGGCCAAGCTAGACCTCAAACGATGAATTGAGCGAGTAGATAGATATATAACGTCATACACTGTAATATACTGCGTTCTCTGTGTAGAAAAGAAAGGAAAACAAAATCCTACCCAATGCGTTACCTCAAAGGAGAAAGGAATTAAACAAACTGTGACATGCGTGAGGACTGTTGATCTAATGTACCCAAAACAGAACTCATCATGAGCTCATCACAAGCTCATGGTTATGCAAAGGTGTACAGAAATATTTAAAGAAATACCTATTTAACATCATATATCCCCCCATGTAATTGGTTTCTTTTTCCCAATAAATGTTGTAAATTCTCTGAAAATGTGATGAGGAATACtagatacatttttttgtttttattaagtTTTAACAATTAGGAATGCTAGATTTAAATATTTTGGATCATCTCTAGGATGACCACATTCATGGTACCTTTTAACAAATGACCCTTAAGACTTATCCACATGTTTATTGGACGTATCAAAGTAGGGATCCCCTATGTTGTTTCTCAAAAGGCTACAATAAGGTAATTCAACCCAGACTTTGTGAGGTGGGGAAAATGGAGGGAGTGGTATTGATGTTTTGTATCCAAAGTGAAAGATGGGAATAAATGGTTATACCTGGTTTTAATACCCAGATGGGAAGCCCAATGTAAAAGGTGGTGAATCATGTtctaatgtacagtaccagtcagtttggacacacctactcactcaagggtgattctttatttttactattttctacattgtagaataaatgaagacatcaaaactatgaaataacacatcaaatcatgtagtaaccaaaaaaatgtgttaaacaaatcaaaatatattttcaaaggAGCCAcactttgctttgatgacagctttgcacattcttggcattctctcaaactgattcacctggaatgcttttccaacagtcttgaaagagttgccacatattctgagcacttgttagcggcttttccttcactctgcaatccaactcatcccaaaccatctcaattcggttggggtcgTCTGATGtcttacacagcatggaggtgtgttgtgtcatagTCCTGAAAAACAGatcgtcccactaagcgcaaaccagatgggatggcgtgtcgctgcagaatattgtggtagccatgctggttaagtgtgccttgaattctaaataaatgactGACAATGTcacctctgcagtagaggtaactctgggtcttcctttcctgtggcggtcctcatgagaggcagtttcatcatagcgcttcatggtttttgcgactgcacttgaagttcTTGCacttttccagattgactgacctgcatgtcttaaagtaatgatggactgttgtttctctttgcttatttgagctgttcttgccataatatggacttggtttgtaccaaataaggctatcttctgtataccaccctaccttgtcacaacacaactgattggctcaaacacattaaaaataaataaaacaaattaacttttaacaaggcacacctgttaattgaaatgcattctaggtgactacctcatgaagctggttgagagaatgccaagagtgtgcaaagctgtcaaggctgaggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU496994 True 2560 lncRNA 0.39 2 74844036 74846616

Neighbor

gene id symbol gene type direction distance location
LOC118964644 kdr coding downstream 23729 74807206 ~ 74820307 (-)
LOC110524556 LOC106560268 coding downstream 342931 74405846 ~ 74501105 (-)
LOC110524553 LOC106560266 coding downstream 489943 74122303 ~ 74354093 (-)
LOC110523002 LOC106560265 coding downstream 768445 74062228 ~ 74075591 (-)
sgcb LOC106560263 coding downstream 827998 74009042 ~ 74016038 (-)
LOC100135915 LOC106560272 coding upstream 2214 74848830 ~ 74891311 (-)
LOC110522887 LOC106560273 coding upstream 54941 74901557 ~ 74911349 (-)
LOC110523004 NA coding upstream 114761 74961377 ~ 74968484 (-)
LOC110524565 LOC106560282 coding upstream 179992 75026608 ~ 75036101 (-)
LOC110524566 NA coding upstream 201829 75048445 ~ 75049425 (-)
G438959 NA non-coding downstream 7931 74835494 ~ 74836105 (-)
G438957 NA non-coding downstream 67834 74775199 ~ 74776202 (-)
G438952 NA non-coding downstream 72644 74770467 ~ 74771392 (-)
G438696 NA non-coding downstream 135094 74708660 ~ 74708942 (-)
G438695 NA non-coding downstream 138106 74705707 ~ 74705930 (-)
G439012 exoc1 non-coding upstream 85555 74932171 ~ 74934342 (-)
G439065 NA non-coding upstream 118145 74964761 ~ 74965137 (-)
G439076 NA non-coding upstream 146520 74993136 ~ 74999899 (-)
LOC110524567 LOC106560283 non-coding upstream 198411 75045027 ~ 75099520 (-)
LOC110524526 LOC106584218 other downstream 1433697 73370439 ~ 73421683 (-)
G437079 NA other downstream 1696908 73146358 ~ 73147128 (-)
G437074 NA other downstream 1718998 73122112 ~ 73125038 (-)
G437054 NA other downstream 1748700 73094794 ~ 73095336 (-)
G436873 NA other downstream 2068168 72774561 ~ 72775868 (-)
G439002 NA other upstream 18643 74865259 ~ 74927797 (-)
G439594 NA other upstream 416857 75263473 ~ 75265403 (-)
G439788 LOC106560295 other upstream 724633 75571249 ~ 75575569 (-)
G441168 glrx2 other upstream 1739842 76586458 ~ 76590370 (-)

Expression


Co-expression Network