G438836


Basic Information

Item Value
gene id G438836
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74950288 ~ 74950686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU496868
gaaaataagtatttggtcacctacaaacaagcaagatttctggctctcacagacctgtaacttcttctttaagaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaaaagacacctgtccacaacctcaaacagtcacactccaaactcctctatggccaagaccaaagagctgtcaaaggacaccagaaacaaaattgtatacctgcaccaggctgggaagactgaatctgcaataggtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggctccacgcaagatctcaccccgtggggtcagaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU496868 True 399 lncRNA 0.44 1 74950288 74950686

Neighbor

gene id symbol gene type direction distance location
LOC110524562 exoc1 coding upstream 4218 74932150 ~ 74946070 (+)
LOC110524561 LOC106560271 coding upstream 108836 74835448 ~ 74841452 (+)
LOC110524560 LOC106560270 coding upstream 180120 74729349 ~ 74770168 (+)
LOC110523003 LOC106560269 coding upstream 287839 74638146 ~ 74662449 (+)
LOC110522886 pdx1 coding upstream 319615 74628427 ~ 74630673 (+)
LOC110523005 LOC106560277 coding downstream 21377 74972063 ~ 75017851 (+)
LOC110524564 LOC106560280 coding downstream 81103 75031789 ~ 75041377 (+)
LOC118964645 LOC106583873 coding downstream 110495 75061181 ~ 75068745 (+)
LOC110524571 LOC106560285 coding downstream 210631 75161317 ~ 75178287 (+)
LOC110524576 uhmk1 coding downstream 381767 75332453 ~ 75347896 (+)
G438831 NA non-coding upstream 21721 74928053 ~ 74928567 (+)
G438807 NA non-coding upstream 47811 74901153 ~ 74902477 (+)
G438628 NA non-coding upstream 251191 74698822 ~ 74699097 (+)
G438623 NA non-coding upstream 258280 74691723 ~ 74692008 (+)
G438595 NA non-coding upstream 286660 74662520 ~ 74663628 (+)
G438841 NA non-coding downstream 14682 74965368 ~ 74965605 (+)
G438904 NA non-coding downstream 146281 75096967 ~ 75099072 (+)
G438908 NA non-coding downstream 150515 75101201 ~ 75101449 (+)
G439139 NA non-coding downstream 158910 75109596 ~ 75110029 (+)
G439210 LOC106560285 non-coding downstream 254778 75205464 ~ 75209077 (+)
G438719 NA other upstream 173819 74772009 ~ 74776469 (+)
G437327 NA other upstream 1455204 73456301 ~ 73495084 (+)
G436588 NA other upstream 1954553 72995499 ~ 72995735 (+)
G436403 NA other upstream 2445853 72503460 ~ 72504435 (+)
G441903 NA other downstream 2317526 77268212 ~ 77268766 (+)
G442273 NA other downstream 2607644 77558330 ~ 77583227 (+)
LOC110524622 LOC106560333 other downstream 3295153 78245839 ~ 78288092 (+)
G445204 NA other downstream 5265792 80216478 ~ 80217090 (+)

Expression


Co-expression Network