G439210 (LOC106560285)


Basic Information

Item Value
gene id G439210
gene name LOC106560285
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 75205464 ~ 75209077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU497293
CTTTGTTCTCCAAGCTGCACTTCAGCTCCAGGATCTGGTTGCCCTTCTGGCGTGAAAGAGCCAGCAGCTCCTCACTTTTAGCCTTGAGCTCTGCGTTCAGCCAGGCAGTCTGGCCTCGCAACAGCTCCTTTTCCTGCTCCATACGCTTCTCACGGTACTTGATGTTGACCTCTGAGGATTCAAGCTCATCCAACTTGAACTGCAGCCCCATCTTTGAGGCATTGACTTCCGCCACTTTGTCATTGAGGCGCTGCAGGTCCTCACTCAGATAGGCCACTTCCTGGGATCTCCTCTCCAATGTACGCACAAGCTCCCGCTTCTCTGCCTCCAGTTCATTTTTGGCTTTACAGAGCTGGGCCTGTTCAGATGTCAACTTCTCTTGGTTGATTTCATACTCTTTATTCTTTTCTAGTACACTCTTGAGTTCTTCATCGATCTTGGTGAACTCCTCTCGGAGTTTGTGGTGCTGTTCAGTCTGGGTCACAAACTGTTCCTGACTCTGTTCAAGACGTTGCACTTTCTCAAAGAACTGTTGTTCGCTATCGACTCTAAATTGCTCCTGGTGTGACTTGAGGGAATCTATTTCATATTGCAGATCAGAAAATAACTTTTCCAGTTTATTTTGAACAGCTTTTGGTAGCTTCGCTATCTCAGCGCGCTCCAACGCTTGAAGTAGCACTGTAGccatatttcagccacaccaatTCTGCTCTGAGCAGGCGCATTGATGACTTGTTCGCTCACAA

Function

NR:

description
nucleoprotein TPR-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU497293 True 746 lncRNA 0.48 6 75205464 75209077

Neighbor

gene id symbol gene type direction distance location
LOC110524571 LOC106560285 coding upstream 33643 75161317 ~ 75178287 (+)
LOC118964645 LOC106583873 coding upstream 136719 75061181 ~ 75068745 (+)
LOC110524564 LOC106560280 coding upstream 164087 75031789 ~ 75041377 (+)
LOC110523005 LOC106560277 coding upstream 187613 74972063 ~ 75017851 (+)
LOC110524562 exoc1 coding upstream 259394 74932150 ~ 74946070 (+)
LOC110524576 uhmk1 coding downstream 123376 75332453 ~ 75347896 (+)
rgs4 LOC106560295 coding downstream 352101 75561178 ~ 75572148 (+)
LOC118964720 LOC106576333 coding downstream 1053217 76262294 ~ 76264534 (+)
LOC110524585 LOC106560359 coding downstream 1329915 76538992 ~ 76541623 (+)
LOC110524586 LOC106560300 coding downstream 1354412 76563489 ~ 76566464 (+)
G439139 NA non-coding upstream 95435 75109596 ~ 75110029 (+)
G438908 NA non-coding upstream 104015 75101201 ~ 75101449 (+)
G438904 NA non-coding upstream 106392 75096967 ~ 75099072 (+)
G438841 NA non-coding upstream 239859 74965368 ~ 74965605 (+)
G438836 NA non-coding upstream 254778 74950288 ~ 74950686 (+)
G439214 NA non-coding downstream 5782 75214859 ~ 75215093 (+)
G439189 LOC106584137 non-coding downstream 11135 75220212 ~ 75224041 (+)
G439190 NA non-coding downstream 18832 75227909 ~ 75229974 (+)
G439218 NA non-coding downstream 23070 75232147 ~ 75232560 (+)
G439220 NA non-coding downstream 28570 75237647 ~ 75240458 (+)
G438719 NA other upstream 428995 74772009 ~ 74776469 (+)
LOC110524560 LOC106560270 other upstream 435298 74729349 ~ 74770168 (+)
G437327 NA other upstream 1710380 73456301 ~ 73495084 (+)
G436588 NA other upstream 2209729 72995499 ~ 72995735 (+)
G441903 NA other downstream 2059135 77268212 ~ 77268766 (+)
G442273 NA other downstream 2349253 77558330 ~ 77583227 (+)
LOC110524622 LOC106560333 other downstream 3036762 78245839 ~ 78288092 (+)
G445204 NA other downstream 5007401 80216478 ~ 80217090 (+)
G445211 NA other downstream 5025803 80234880 ~ 80235428 (+)

Expression


Co-expression Network