G439190


Basic Information

Item Value
gene id G439190
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 75227909 ~ 75229974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU497272
CCCACAGGGATCTGAGTCGTATTATTGTGGGGGTTAGTACCTCTTCCTTTCACTCCTTTTCAAAACACCCACGTTTGGTGCCAACTGAACACAGCCTTGCTCTACCCAGAACTCACTTCTCCACAGAGAACTCTCCTCCCTCGGCTGGCTTATCTTCTCCGCCGGGGGGCCTCTCGAAACGGCGTGGCGGCCGCCTGTCTGTCCGGGGGGGTCTGTCTGTAGGGGGGCGGCCCTCGCCCTGGCCCTCACGGGGTGGACCCCCAGCCGGGCCCTGACCCTCACGTCTGGGACCCATTCTCCTGGGACCAGGTCCATCTTTCTTCAGAGTCACCGGTGCCAGAGGCTCATCTTTCTTATCTGCAGGGACGACCTTCCTGTCTTTCTGGGACTCCTTTTTCTGGAGCTTGGCAGCTTGCGCCGCGGTCTTAGCGGCACCAGGGACAGGAGCCTCCTTCTTCTTGTTCTCCGCCTCCTTCAACAGCTCGAACGGGTCCGACTCGTCGTCAAATAGTTGGTCGAATCGGTTAGCTATGGCGCAGCCGAAACCTTCTTGCATATGTCCGGGCATGATGGCGCCCCTTCAGCAGGATTTTCCTCCGATTCTACGAGGCTTGGTGCGAACACTTCGCTAGATGTTGCCACAAGATGGCTGGGGAAAGAACCTTCTT

Function

NR:

description
Plasminogen activator inhibitor 1 RNA-binding protein

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU497272 True 668 lncRNA 0.58 2 75227909 75229974

Neighbor

gene id symbol gene type direction distance location
LOC110524571 LOC106560285 coding upstream 56088 75161317 ~ 75178287 (+)
LOC118964645 LOC106583873 coding upstream 159164 75061181 ~ 75068745 (+)
LOC110524564 LOC106560280 coding upstream 186532 75031789 ~ 75041377 (+)
LOC110523005 LOC106560277 coding upstream 210058 74972063 ~ 75017851 (+)
LOC110524562 exoc1 coding upstream 281839 74932150 ~ 74946070 (+)
LOC110524576 uhmk1 coding downstream 102479 75332453 ~ 75347896 (+)
rgs4 LOC106560295 coding downstream 331204 75561178 ~ 75572148 (+)
LOC118964720 LOC106576333 coding downstream 1032320 76262294 ~ 76264534 (+)
LOC110524585 LOC106560359 coding downstream 1309018 76538992 ~ 76541623 (+)
LOC110524586 LOC106560300 coding downstream 1333515 76563489 ~ 76566464 (+)
G439189 LOC106584137 non-coding upstream 3868 75220212 ~ 75224041 (+)
G439214 NA non-coding upstream 12816 75214859 ~ 75215093 (+)
G439210 LOC106560285 non-coding upstream 18832 75205464 ~ 75209077 (+)
G439139 NA non-coding upstream 117880 75109596 ~ 75110029 (+)
G438908 NA non-coding upstream 126460 75101201 ~ 75101449 (+)
G439218 NA non-coding downstream 2173 75232147 ~ 75232560 (+)
G439220 NA non-coding downstream 7673 75237647 ~ 75240458 (+)
G439222 NA non-coding downstream 15758 75245732 ~ 75246005 (+)
G439292 NA non-coding downstream 139529 75369503 ~ 75369741 (+)
G439293 NA non-coding downstream 143703 75373677 ~ 75374168 (+)
G438719 NA other upstream 451440 74772009 ~ 74776469 (+)
LOC110524560 LOC106560270 other upstream 457743 74729349 ~ 74770168 (+)
G437327 NA other upstream 1732825 73456301 ~ 73495084 (+)
G436588 NA other upstream 2232174 72995499 ~ 72995735 (+)
G441903 NA other downstream 2038238 77268212 ~ 77268766 (+)
G442273 NA other downstream 2328356 77558330 ~ 77583227 (+)
LOC110524622 LOC106560333 other downstream 3015865 78245839 ~ 78288092 (+)
G445204 NA other downstream 4986504 80216478 ~ 80217090 (+)
G445211 NA other downstream 5004906 80234880 ~ 80235428 (+)

Expression


Co-expression Network