XLOC_023547 (palmdb)


Basic Information

Item Value
gene id XLOC_023547
gene name palmdb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 29964976 ~ 29997190 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046564
acttaccACACATACATGCAAACATGCTGGAATGAACAGACTGAATTCCGGTCGGCGCTTCCCAACTAAAACCATCAGCAGAAGATAGCCGGATCataatggaggaagaaaccctgCTGCGAGAGAGACTGCAGGCTATAACAGACAAAAGAAGAATTCGAGAGGAAATAGAAAAGAAACGAAGAAGCATTGAAGAAGAGAAATTAAACCTACAATATCTAAAGaaaaaaactctcCGGGAGCAATGGCTGATGGACGGGCTGAGCACTTTAACCGAAGAGGAGCAGGAGTCGGCGAAGGCCCAGACAGAAGACAACCAACAGCAGACTAAAGTCCTGCAGAGCAACATCCACAGAATAGAGCTGGAGATTGCGGCCCTTGAGACACAAGAGCTGGAGATTTCAGCGAAAGAAGAGCTTCTTCTGAAACAACTGAAGGAGGTGGAGAAAACCCCAGCGGACATCATAAAGGTAGCGCTTGTGTAATCACTTTAACAGGCCTGGAGTCTCCTTTATCGCTTATTACAACAGCAAGCAGCTTCAATTGGATCCGCTTTTGAGTTGGAACAAGGGAAATCATTAGAATTCAGCATGCTGTGAAGATGGCCCTCGGTTCCAAACTGACGTCAAGATAAAAATTGTTTGATGCTGTGAGACAAGGATCTGTGTGTATCATCTGTGTATGAAACTTGGTTTTGCTTTATATCTTCTTATCTTTTCATCAAATCCGGTTTACTGCGCAAACTACTGTATTGACCCCACAGGAAGTAAACGCAAACATGCAGCCAGGTAAagaaatttcttcttttttttctgcattgccatatacagttgaaggcaaaaatattagccctcctgggaatttcttttttaaatatttctaaaattatttttaacagagcaaggaacttttcacagtatgtctg

Function

symbol description
palmdb Predicted to act upstream of or within regulation of cell shape. Predicted to be located in membrane. Predicted to be active in cytoplasm. Is expressed in head and hypothalamus. Orthologous to human PALMD (palmdelphin).

GO:

id name namespace
GO:0008360 regulation of cell shape biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090713-3 Predicted to act upstream of or within regulation of cell shape. Predicted to be located in membrane. Predicted to be active in cytoplasm. Is expressed in head and hypothalamus. Orthologous to human PALMD (palmdelphin).

Ensembl:

ensembl_id ENSDARG00000034321

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046564 True 925 processed_transcript 0.42 5 29964976 29997190

Neighbor

gene id symbol gene type direction distance location
XLOC_023546 CR352310.2 coding downstream 1118 29961238 ~ 29963858 (-)
XLOC_023545 NA coding downstream 42156 29921076 ~ 29922820 (-)
XLOC_023544 LO018627.1 coding downstream 58072 29895249 ~ 29906904 (-)
XLOC_023542 aglb coding downstream 96825 29783638 ~ 29868151 (-)
XLOC_023543 si:dkeyp-88h4.2 coding downstream 101604 29860769 ~ 29863372 (-)
XLOC_023548 plppr4b coding upstream 56461 30053651 ~ 30096666 (-)
XLOC_023549 snx7 coding upstream 228777 30225967 ~ 30275735 (-)
XLOC_023550 NA coding upstream 332277 30329467 ~ 30376218 (-)
XLOC_023551 ptbp2a coding upstream 838739 30835929 ~ 30862168 (-)
XLOC_023552 NA coding upstream 906253 30903443 ~ 30911865 (-)
XLOC_023665 dre-mir-735 misc upstream 8180771 38177961 ~ 38178027 (-)
XLOC_023538 CR847965.1 non-coding downstream 491001 29473856 ~ 29473975 (-)
XLOC_023537 CR388050.1 non-coding downstream 912150 29052708 ~ 29052826 (-)
XLOC_023536 CR388050.3 non-coding downstream 930236 29034624 ~ 29034740 (-)
XLOC_023534 CT961047.1 non-coding downstream 990077 28972084 ~ 28974899 (-)
XLOC_023553 NA non-coding upstream 930498 30927688 ~ 30972863 (-)
XLOC_023554 NA non-coding upstream 1042830 31040020 ~ 31081433 (-)
XLOC_023563 NA non-coding upstream 1457896 31455086 ~ 31458194 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G296678 NA non-coding CI01000082 null 1951014 ~ 1961003 (-)