G439822


Basic Information

Item Value
gene id G439822
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 75617663 ~ 75667165 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU497962
GTTCCAGCCTTGTCTTCAGCTGCGACCCAGAATGAACTAGCAGTGATCAAACAATTTGTCTCGACCGCCCATCCAATACCTAATAACTAAAGCATCCCTCCCAGCTGGATCCAAATGGAGCTGCCATATAAGGCTTAGTGGGAGATCTGGAGAAGGCTATGATAGAATGAGATACAAGGAGCTACATTGGAGTGAATTATGATACCAAGGGACTAGGTAAGGTAGAATGATTATACCTAGGGGCTAGTTAAGGTAGAGATACTTTATGTAGGGGCTGTGTTAGGTAATAATAATATGTGGTGTATAATACCTAGAGGCTACATAAGGTTGAGTGATTATACCAAGGAACTACATAAGGTAGTGTGATTATACTTTGGGGCTTCATAAGGTAGAGTGAGTATACCAAGGAACTACATAAGGTAGAGTGATTATACCAAGGAACTACATAAGGTTGAGTGATTATACCAAGGAACTACATAAGGTAGTGTGATTATACCTTGGGGCTTCATAAGGCAGAGTGATTATACCAAGGAACTACATAAGGTAGAGTGATTATACCTTGGGGCTTCATAAGGTAGAGTGATGATACCTAGGGGCTACATAAGGTAGAGCGAGGATACCTAGAGGCTACATAAGGCAGAGTGATGATACTTAGTGGCTACATAAGGTAGAGTGATTATACCTTGGGGCTTCATAAGGTAGAGTGATGATACCTAAGGGGCTACATAAGGTAGAGTAATTATCCCAACTGGGCTACATAATGTAGACTGATGATACCTAGGGGCTACATAAGGTAGAGTAATTATACCAAGGGGCTAGGTAATGTAGAATTATGATACCCAGGGGTAGGTAACGTAGAATATGTTGTAATACCTATGGGCTGCGTAATGTAGAATGATGATACCTAGCACCTAAGAAAGGTGAGGTCAGGTGGTCTGAGACCAAATGTGACTAAGAAGGTACAGAGAGGTACTATAAGGTACTTGTCCTCAACGGCTACCCCTCATGGTGTCACACAAGGAGAGAAGAATAATTACCACAGATAAAACTTTTGTGATACTGTATTCCGCCCTGAACTGAAATGTAAATTCAGGTTTTATGCAGTGTTGTTCAATGTTCTATATTTATTCTCAACCAAATGCTCTACTGTATTACTGCAAACAGTCATACAGCCACATCACTTACTCTAAAGTGTTATGTTCCACCAAGACAAACTCAAAATGTCGCTCACAAAGGGACCTAACAAAAAAATTATTGACAAAGAGAAAGGCATTCAAAAGGGGTTCTGAAAGGCACCCATGTGGGTGCCCCCTGAAAGTTGGCAAAGCACCTAgtaaggggttctgaaagacacccaccatggatGCCCACTTGGATTGCCTCCGGAATGACCAACTgaaagaaaaacccacaacaaCTTAGGATAGAGAGTGAAAACAATATGGAGCAAAACAAACATGGGAAACACCAAAACTCTGGCTTCTTTCAAACTTAAATAAGGTGTGCTCGAAATCGCATCACAGCTGACATAAAGTGCAGCTCTCCCCAACATCTCTCATGCGCAACTGGAGCACTCGGCCAGCCACTCctaaatagcacctgggccaacacaggtgaaacaccttcctaCTAACGAG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU497962 True 1637 lncRNA 0.42 3 75617663 75667165

Neighbor

gene id symbol gene type direction distance location
LOC110524577 LOC106560293 coding downstream 89113 75361138 ~ 75528550 (-)
LOC110524574 LOC106560290 coding downstream 284187 75299095 ~ 75333476 (-)
LOC110524573 LOC106560289 coding downstream 321055 75237541 ~ 75296608 (-)
LOC110524572 LOC105011858 coding downstream 387626 75220206 ~ 75230037 (-)
rgs8 LOC106560297 coding upstream 4548 75671713 ~ 75706466 (-)
LOC110523006 LOC106560358 coding upstream 72945 75740110 ~ 75743709 (-)
LOC110524582 LOC106560298 coding upstream 215064 75882229 ~ 75954489 (-)
LOC110524583 LOC106560299 coding upstream 621756 76288921 ~ 76324868 (-)
LOC110524587 uchl5 coding upstream 911078 76578243 ~ 76586678 (-)
G439691 NA non-coding downstream 190492 75426944 ~ 75427171 (-)
G439690 NA non-coding downstream 191137 75426147 ~ 75426526 (-)
G439687 NA non-coding downstream 196959 75420385 ~ 75420704 (-)
G439686 NA non-coding downstream 198109 75419340 ~ 75419554 (-)
G439685 NA non-coding downstream 199054 75418252 ~ 75418609 (-)
G439870 NA non-coding upstream 46397 75713562 ~ 75713846 (-)
G439875 NA non-coding upstream 51668 75718833 ~ 75719041 (-)
G439887 NA non-coding upstream 68904 75736069 ~ 75736291 (-)
G439927 NA non-coding upstream 92833 75759998 ~ 75760201 (-)
G439929 LOC106581772 non-coding upstream 94331 75761496 ~ 75761708 (-)
G439788 LOC106560295 other downstream 42094 75571249 ~ 75575569 (-)
G439594 NA other downstream 352260 75263473 ~ 75265403 (-)
LOC110523004 NA other downstream 653967 74961377 ~ 74968484 (-)
G439002 NA other downstream 689866 74865259 ~ 74927797 (-)
LOC110524526 LOC106584218 other downstream 2207324 73370439 ~ 73421683 (-)
G441168 glrx2 other upstream 919293 76586458 ~ 76590370 (-)
G441483 NA other upstream 1235217 76902382 ~ 76902771 (-)
G441630 NA other upstream 1346834 77013999 ~ 77021375 (-)
G442115 NA other upstream 1739577 77406742 ~ 77407135 (-)
G442381 rpl5 other upstream 1956134 77623299 ~ 77627214 (-)

Expression


Co-expression Network