XLOC_023549 (snx7)


Basic Information

Item Value
gene id XLOC_023549
gene name snx7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 30225967 ~ 30275735 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046567
ATGAGTGTACCAGCCGTCGACAACACCGTGTCATCGGGCAATGCTTCGGTCGCGATCCCTGCTGACATGAGCGGGCAAATGTTAGATCTAGATGAAGACGATGACTTGGAAGTTTTCAGTAAGGATACGACTATCACAGACGGGAGCTCTTTCAACGCCTCCATGCAGACCTCACCAGCTTCAATGATCAACCAGTACAAGTTTGAGGAAGAAGAGGAAGATGTTGGCACCAAAGATATTTTCGTCACAGTCGATAACCCTGAGAGTCACGTGACTGCCATTGAGACATACATCACCTACCGGGTCATGACCAAGACCACACGGAGCGAGTTTGACTCTAGTGAGTTTGAGGTGCGAAGACGATACCAGGACTTCCTGTGGTTAAAGGGACGCCTGGAAGAAGCTCATCCTACGCTCATTGTTCATCCTCTGCCAGAGAAGTTTGTGATGAAGGGAATGGTGGAGAGGTTTAATGAAGATTTCATAGAGACCAGAAGAAGGGCTCTGCACAGGTTTCTTAACAGAATAGCAGAACATCCCATTTTCTCCAGCACTGAAGACTTTAAGATCTTTCTCACAGCTGCATCTGAGGAGCTGATCTCTCATAAGAAGCAGGGTCCGGGGTTTCTGAGCCGGATGGGCGAGACGGTGAAGGCCGTTGCTGCTTCTGTTCGAGGTGTCAGGAACCGGCCGGAGGAGTTTAATGATATGCAGGAGTATGTGGAGGCCTTCAGCCAGAAGATCAACTCACTCGATAAAGTCACTCAGAGGATCATCAGAGAGCAGAGAGAGTACCTGGAGGAGCTGAAGGAGTGCGGGCCGACGTACACACTGTGGTCAAACTCCGAGCAGGAACTGGCTGAACCCCTGAAGAACATGGCCGACTGTCTGGACAGATGCTATAAGGAGACAGACGAGCAGGTCAAACAGCTGAACGATCAGCTCAGTCCAGCTCTTCATGAGTACGTGCTCTGCACAGAGACGCTCAAGGCAGTAATAAGGAGGCGAGACAACATCCAGGCGGATTTCGAAGCCAAAACCGAAGCTCTCGCCACCAAGAAGGCCGACAGAGAAGCGGATTCTAAGGTGCTGAGTTTAGCATGGGACAGCTTGGTGGGACGATCCCCTGAGGAGGTCAAACAGCAGAGACAGCAGAAACTTAAGGCAGAGATTAAGGAGATGAAAGATGACCTGGAAAAGTTGGAGGACCGGCTGGAGTGGGCAAATAATGCACTCAAGAGTGACTGGACCCGCTGGAACAAGGTCATGAGAACTGACCTGCGATCAGCCTTTGTTGACACAGCGGAGAGGAATGTCAGCTACTATGAAAAGTGTTTGGCTATATGGGAGTCCTTCCTGCATTCTCAAAGGACAGACGCTGAAGCAAATGGAAAGGCTGACTTTTCCTGATCTCCCATGGTGCTTTTAGGTGAACGGGACCACACCAAAACCGCTTTTATTCCAAAACATACCAATAATATCCTATTCAGAGACTGAAACAccaaagagagacagagagagagtcaTCCTAAAACAAGCGTTCAGCAACTGACCCTGTAATAGAAGAATCATTTCCTGTCAAATTATACTGCCAAATCTTTTATACTAAGACTAGCGTTTCATTTTTGTTTCTAAGagtttaaaactataataataataataataataataataaatgcaatccCCGGAAAGTGAAGATGCATACATTATTGCGTCATGTGACCTTTCTGTTGACGATTTTATCCACATGACGTTTGAGGTTCATATGTCTTGGCCTTTCACTGATCAATGCAAATGCTGTTTACCTCTTTTCAAAGCTGCCTTGATGCCCAAAAACCATTGGATTAGtggataaacaaaaaataaatgcactCTGAATGGATGCTTTTTTGCATTGGACTGAATTGATCTCCGTGCTATTCCATTCAGGTTACCAAAGCCACGTCTTTATGcaaacattgaagaagatgctGACATTCCGCAACTGTTTACATTGATTCTAAAATGCAGAAATCAAGAGAGTTTAACTAAAGCCTTTGAATATGAAATGAGTGCATTTTACAGTGTGATTTCTGAATGTGGTGCACTAACAGCAGAATGTGGAGTAAATTTCAAATGATTTAAAACTATGCCTTTTACAGACGATTAGAAAAATGATTGTCTTGGAATTATCTATGTAttctttgaatatatatatataaaaaaatgctgttataaaaaaaaaaaaaagtgtgttttaattctATCTTGCTTGGCAAAGTGAATAATGAATGTTAAACAAGGTTACAAATCCCAAAATGATCACATGAAGCATTAcaatagaggtctgcattcccccGACCAGATGTCTTGCAGCGCAGAAATGAATTTCCGAACACGGTAACGGTCAGTGTAAATTGAACCGGAGCGGACGGGCTAATAATATAGCATGCCAACGTTATTTCGGAACAGCATATCATATAATACCTCAAAGTTTTAGCCTTTAGCAGTCAAGACTGGAACCTCAAGTTTAAGGcagcactcatgtctcatcacaaatgggtaaacaaaactgacatttagccaaCATCCTTGCACAACCTACAATTTTATGTTATCTCTGATTGGGCTGAAGAATGGCTGAATATATAGCAGGAGCGGTTGGGTGCAGAATGACGCCCCATTGACACGGTCAaagcttgactgaaggcgtgtcagAAGTGATTGTcttagaagcgtcagccaatgaaactcagtcagcaataggccactgtctagctagtatatttgcatacagtgatctgattggctgaggcttccgtcggcgcttgaaaagttgagctagtcccaacttctgcagcaagcaacgcctctgaagtggcgccaacggatccacaatgcagttccgcaacgcctgatgtcacccattcaaagtgaatgggaagcgttgacgctgacgccctgtgtgcATGGGGAGTAAAACCCTGCGGGAGTGGGACTAAAAAGTTAGTCCTGCTCAGACCCcttctttaaaatgctgctttaAAAACTCTTTGCTTTTCTGGATCAAGGTGGAGCCAAGCTGGAGCACTCACTCTGATCTCCCGGACTCTGCATTGGTTGGGAACatttcaaattgaaaaaaaaaaaaaaaaaaacacaagattaGCAATGAAAATTCAGAAAGTGCAACCAGCAGAATCtgggaattaaaaaaataaacttaaaaatagcCTCCAGAGACTTCCATTCCACTGACAAGTTTCGCtgttcactgcattgcaaagttcaagcttggtgaactctgacctgcgaaatcacaatCACATGACTGCATAAGACCAATCGAAAATCGAAACaagacctctctggacagaaattgaaaaaaatggAGCAATCGCTTGGTTTTTagaaatgtctaatcatcttgtttaatcccaccccttttcacagAATTTtccggatgtatacctgacccgtgagccgtctgacaataaagtgcccttctgaattaaATCAGCAGGACACATGTCTTTAACTgtagtttggcagtttcactttaactcatgaatatttcattcatgccccgtgACAAACACGGATATTAGACAAAAATAAGGAGTTAGGACCGGTAAGAGCGTTATGGGATTTAATAACACAtgccaaatgaaaagaaaaaaacttccgcatttcgcgatgtgtgtgttttctgtgtgtttgtgtgtgtgtgtagtcctttactgacagccttGTATGTGGATCTTGTTGAAAAAAATTTTGAAAAGTCCTTCATGACGGTGATAGTTTACTTGCaatgtttacttcaataatgccactaatatatgcatactccacacgtcttaattTCATGTCTGTTTTTCCCCATCGCTGTTTCGATCTTATGTAGCCAACAGTAccaaattcatgtttaactgaataaacagtcagtaaacacaagtacatcttattgaacatcatttattttcatcaccaattatcatagtagaacagttgctcaagcagtttgtgatgcattttggaaacaggagatgagcccttGGTCTAATGTGCCACCttgcttgagaaacccgttctcaaagacttattatttgggtagcttACATTCTGAATGtattcggcagaattcaaatgagcgaTTTTAATCTAGATGACTTTCGAGATTGatctagattaaaaaattaattatgcccaattttaatatat
>TCONS_00046568
CAACCATCATAATATAGTTTCCTACCCAAAGtccatttttaattatgtaaatataaacCTTTACACGTATAAACATTTTCTTATTTGCATTGCTGTTATTTCACGGTTCTTATTCGTTTAATAGTCAAAGGCACGAGCTGTTGGCCAAAAACCAACCATCATAAcattaatactataataataactaTCCAAAGTGCACTTTAAATTATGTAAACAGATGACATataaacttaaaaacattttttctattttcatCGCTATTATTTCACGGCTCAAATTCGTATAACATTTAAAGGCACAAGCTGCTGGACAAAAACCAACCATCAAAATATTGAGGCAAATACCGTAAACACACACTCCTTCACGTGGGCGTCCACACACGCCTCAACTCTCGGCTCTTTCCCTGTTCCGCGGTTTCCGATTCTGCGCAGTGGAGCCCGCTCCGCCTCAGCTGAGCTTTTTGAGAGTTGTgcggaaaaaaaaactgatgaagTCCAGAAAACTTGTAGCAAAGTAGCGATAAGAGCAGCGATGAGTGTACCAGCCGTCGACAACACCGTGTCATCGGGCAATGCTTCGGTCGCGATCCCTGCTGACATGAGCGGGCAAATGTTAGATCTAGATGAAGACGATGACTTGGAAGTTTTCAGTAAGGATACGACTATCACAGACGGGAGCTCTTTCAACGCCTCCATGCAGACCTCACCAGCTTCAATGATCAACCAGTACAAGTTTGAGGAAGAAGAGGAAGATGTTGGCACCAAAGATATTTTCGTCACAGTCGATAACCCTGAGAGTCACGTGACTGCCATTGAGACATACATCACCTACCGGGTCATGACCAAGACCACACGGAGCGAGTTTGACTCTAGTGAGTTTGAGGTGCGAAGACGATACCAGGACTTCCTGTGGTTAAAGGGACGCCTGGAAGAAGCTCATCCTACGCTCATTGTTCATCCTCTGCCAGAGAAGTTTGTGATGAAGGGAATGGTGGAGAGGTTTAATGAAGATTTCATAGAGACCAGAAGAAGGGCTCTGCACAGGTTTCTTAACAGAATAGCAGAACATCCCATTTTCTCCAGCACTGAAGACTTTAAGATCTTTCTCACAGCTGCATCTGAGGAGCTGATCTCTCATAAGAAGCAGGGTCCGGGGTTTCTGAGCCGGATGGGCGAGACGGTGAAGGCCGTTGCTGCTTCTGTTCGAGGTGTCAGGAACCGGCCGGAGGAGTTTAATGATATGCAGGAGTATGTGGAGGCCTTCAGCCAGAAGATCAACTCACTCGATAAAGTCACTCAGAGGATCATCAGAGAGCAGAGAGAGTACCTGGAGGAGCTGAAGGAGTGCGGGCCGACGTACACACTGTGGTCAAACTCCGAGCAGGAACTGGCTGAACCCCTGAAGAACATGGCCGACTGTCTGGACAGATGCTATAAGGAGACAGACGAGCAGGTCAAACAGCTGAACGATCAGCTCAGTCCAGCTCTTCATGAGTACGTGCTCTGCACAGAGACGCTCAAGGCAGTAATAAGGAGGCGAGACAACATCCAGGCGGATTTCGAAGCCAAAACCGAAGCTCTCGCCACCAAGAAGGCCGACAGAGAAGCGATGAAAGATGACCTGGAAAAGTTGGAGGACCGGCTGGAGTGGGCAAATAATGCACTCAAGAGTGACTGGACCCGCTGGAACAAGGTCATGAGAACTGACCTGCGATCAGCCTTTGTTGACACAGCGGAGAGGAATGTCAGCTACTATGAAAAGTGTTTGGCTATATGGGAGTCCTTCCTGCATTCTCAAAGGACAGACGCTGAAGCAAATGGAAAGGCTGACTTTTCCTGATCTCCCATGGTGCTTTTAGGTGAACGGGACCACACCAAAACCGCTTTTATTCCAAAACATACCAATAATATCCTATTCAGAGACTGAAACAccaaagagagacagagagagagtcaTCCTAAAACAAGCGTTCAGCAACTGACCCTGTAATAGAAGAATCATTTCCTGTCAAATTATACTGCCAAATCTTTTATACTAAGACTAGCGTTTCATTTTTGTTTCTAAGagtttaaaactataataataataataataataataataaatgcaatccCCGGAAAGTGAAGATGCATACATTATTGCGTCATGTGACCTTTCTGTTGACGATTTTATCCACATGACGTTTGAGGTTCATATGTCTTGGCCTTTCACTGATCAATGCAAATGCTGTTTACCTCTTTTCAAAGCTGCCTTGATGCCCAAAAACCATTGGATTAGtggataaacaaaaaataaatgcactCTGAATGGATGCTTTTTTGCATTGGACTGAATTGATCTCCGTGCTATTCCATTCAGGTTACCAAAGCCACGTCTTTATGcaaacattgaagaagatgctGACATTCCGCAACTGTTTACATTGATTCTAAAATGCAGAAATCAAGAGAGTTTAACTAAAGCCTTTGAATATGAAATGAGTGCATTTTACAGTGTGATTTCTGAATGTGGTGCACTAACAGCAGAATGTGGAGTAAATTTCAAATGATTTAAAACTATGCCTTTTACAGACGATTAGAAAAATGATTGTCTTGGAATTATCTATGTAttctttgaatatatatatataaaaaaatgctgttataaaaaaaaaaaaaa
>TCONS_00046569
GGGCGAGACGGTGAAGGCCGTTGCTGCTTCTGTTCGAGGTGTCAGGAACCGGCCGGAGGAGTTTAATGATATGCAGGAGTATGTGGAGGCCTTCAGCCAGAAGATCAACTCACTCGATAAAGTCACTCAGAGGATCATCAGAGAGCAGAGAGAGTACCTGGAGGAGCTGAAGGAGTGCGGGCCGACGTACACACTGTGGTCAAACTCCGAGCAGGAACTGGCTGAACCCCTGAAGAACATGGCCGACTGTCTGGACAGATGCTATAAGGAGACAGACGAGCAGGTCAAACAGCTGAACGATCAGCTCAGTCCAGCTCTTCATGAGTACGTGCTCTGCACAGAGACGCTCAAGGCAGTAATAAGGAGGCGAGACAACATCCAGGCGGATTTCGAAGCCAAAACCGAAGCTCTCGCCACCAAGAAGGCCGACAGAGAAGCGGATTCTAAGGTGCTGAGTTTAGCATGGGACAGCTTGGTGGGACGATCCCCTGAGGAGGTCAAACAGCAGAGACAGCAGAAACTTAAGGCAGAGATTAAGGAGATGAAAGATGACCTGGAAAAGTTGGAGGACCGGCTGGAGTGGGCAAATAATGCACTCAAGAGTGACTGGACCCGCTGGAACAAGGTCATGAGAACTGACCTGCGATCAGCCTTTGTTGACACAGCGGAGAGGAATGTCAGCTACTATGAAAAGTGTTTGGCTATATGGGAGTCCTTCCTGCATTCTCAAAGGACAGACGCTGAAGCAAATGGAAAGGCTGACTTTTCCTGATCTCCCATGGTGCTTTTAGGTGAACGGGACCACACCAAAACCGCTTTTATTCCAAAACATACCAATAATATCCTATTCAGAGACTGAAACAccaaagagagacagagagagagtcaTCCTAAAACAAGCGTTCAGCAACTGACCCTGTAATAGAAGAATCATTTCCTGTCAAATTATACTGCCAAATCTTTTATACTAAGACTAGCGTTTCATTTTTGTTTCTAAGagtttaaaactataataataataataataataataataaatgcaatccCCGGAAAGTGAAGATGCATACATTATTGCGTCATGTGACCTTTCTGTTGACGATTTTATCCACATGACGTTTGAGGTTCATATGTCTTGGCCTTTCACTGATCAATGCAAATGCTGTTTACCTCTTTTCAAAGCTGCCTTGATGCCCAAAAACCATTGGATTAGtggataaacaaaaaataaatgcactCTGAATGGATGCTTTTTTGCATTGGAC

Function

symbol description
snx7 Enables cysteine-type endopeptidase activity involved in apoptotic process. Acts upstream of or within liver development and negative regulation of apoptotic process. Is expressed in gut and liver. Orthologous to human SNX7 (sorting nexin 7).

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0001889 liver development biological_process
GO:0097153 cysteine-type endopeptidase activity involved in apoptotic process molecular_function
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-77 Enables cysteine-type endopeptidase activity involved in apoptotic process. Acts upstream of or within liver development and negative regulation of apoptotic process. Is expressed in gut and liver. Orthologous to human SNX7 (sorting nexin 7).

Ensembl:

ensembl_id ENSDARG00000105185

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046567 False 4203 mRNA 0.42 10 30225967 30275204
TCONS_00046568 False 2658 mRNA 0.43 9 30227941 30275735
TCONS_00046569 True 1262 mRNA 0.46 6 30228270 30263301

Neighbor

gene id symbol gene type direction distance location
XLOC_023548 plppr4b coding downstream 129301 30053651 ~ 30096666 (-)
XLOC_023547 palmdb coding downstream 228777 29964976 ~ 29997190 (-)
XLOC_023546 CR352310.2 coding downstream 262109 29961238 ~ 29963858 (-)
XLOC_023545 NA coding downstream 303147 29921076 ~ 29922820 (-)
XLOC_023544 LO018627.1 coding downstream 319063 29895249 ~ 29906904 (-)
XLOC_023550 NA coding upstream 53732 30329467 ~ 30376218 (-)
XLOC_023551 ptbp2a coding upstream 560194 30835929 ~ 30862168 (-)
XLOC_023552 NA coding upstream 627708 30903443 ~ 30911865 (-)
XLOC_023553 NA coding upstream 651953 30927688 ~ 30972863 (-)
XLOC_023554 NA coding upstream 764285 31040020 ~ 31081433 (-)
XLOC_023665 dre-mir-735 misc upstream 7902226 38177961 ~ 38178027 (-)
XLOC_023538 CR847965.1 non-coding downstream 751992 29473856 ~ 29473975 (-)
XLOC_023537 CR388050.1 non-coding downstream 1173141 29052708 ~ 29052826 (-)
XLOC_023536 CR388050.3 non-coding downstream 1191227 29034624 ~ 29034740 (-)
XLOC_023534 CT961047.1 non-coding downstream 1251068 28972084 ~ 28974899 (-)
XLOC_023563 NA non-coding upstream 1179351 31455086 ~ 31458194 (-)

Expression


Co-expression Network