G439930


Basic Information

Item Value
gene id G439930
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 75761806 ~ 75762027 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU498079
gcagcgtttacctggaggtttatcacgcaatccccctgtcgatggggtggtaattgggtcactttctttttactgaaagcgatagccaaatcggcatactcagcGGGAATgtgcacggtggaaacctggtctggactctccaccgttgtcgcaccgatggaaactcctacacacctgcctgaacactcaTCAGACCACCCCTGGAGAGTTCCCTGTTTCCAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU498079 True 222 lncRNA 0.53 1 75761806 75762027

Neighbor

gene id symbol gene type direction distance location
rgs4 LOC106560295 coding upstream 189658 75561178 ~ 75572148 (+)
LOC110524576 uhmk1 coding upstream 413910 75332453 ~ 75347896 (+)
LOC110524571 LOC106560285 coding upstream 589985 75161317 ~ 75178287 (+)
LOC118964645 LOC106583873 coding upstream 693061 75061181 ~ 75068745 (+)
LOC110524564 LOC106560280 coding upstream 720429 75031789 ~ 75041377 (+)
LOC118964720 LOC106576333 coding downstream 500267 76262294 ~ 76264534 (+)
LOC110524585 LOC106560359 coding downstream 776965 76538992 ~ 76541623 (+)
LOC110524586 LOC106560300 coding downstream 801462 76563489 ~ 76566464 (+)
LOC110524588 LOC106560302 coding downstream 812347 76574374 ~ 76576547 (+)
LOC110524593 LOC106560306 coding downstream 847942 76609969 ~ 76639478 (+)
G439928 NA non-coding upstream 199 75761403 ~ 75761607 (+)
G439910 NA non-coding upstream 9915 75751611 ~ 75751891 (+)
G439891 NA non-coding upstream 23621 75737783 ~ 75738185 (+)
G439886 NA non-coding upstream 25385 75736203 ~ 75736421 (+)
G439885 NA non-coding upstream 26138 75735429 ~ 75735668 (+)
G439932 NA non-coding downstream 956 75762983 ~ 75763255 (+)
G439943 NA non-coding downstream 7163 75769190 ~ 75769583 (+)
G440045 NA non-coding downstream 76718 75838745 ~ 75838952 (+)
G440064 NA non-coding downstream 90483 75852510 ~ 75852767 (+)
G440068 NA non-coding downstream 91984 75854011 ~ 75854335 (+)
G438719 NA other upstream 985337 74772009 ~ 74776469 (+)
LOC110524560 LOC106560270 other upstream 991640 74729349 ~ 74770168 (+)
G437327 NA other upstream 2266722 73456301 ~ 73495084 (+)
G436588 NA other upstream 2766071 72995499 ~ 72995735 (+)
G441903 NA other downstream 1506185 77268212 ~ 77268766 (+)
G442273 NA other downstream 1796303 77558330 ~ 77583227 (+)
LOC110524622 LOC106560333 other downstream 2483812 78245839 ~ 78288092 (+)
G445204 NA other downstream 4454451 80216478 ~ 80217090 (+)
G445211 NA other downstream 4472853 80234880 ~ 80235428 (+)

Expression


Co-expression Network