XLOC_023551 (ptbp2a)


Basic Information

Item Value
gene id XLOC_023551
gene name ptbp2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 30835929 ~ 30862168 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046571
gtgtgtgcgcgtgtttgtatgtgtttctgAGCTAAAGACAGTGAGGaggaataacacacacatttactcatcggcgggtttatttttttaaaacacagatcACCAGTAATGGACGGcattGGTGACGTCGCAGTTGGTGTAAAGAGAGGATCAGATGAGCTGCTGTCCGGCGGCATGTATAACAGCCCTAGTTCTGGGTTGAGCAGTATCAGTGATACAACATCCAATGGCAGTGACAGCAAAAAACTCAGAGTTGAAGAGAGAGTCGGCGACGCCCCGCCATCCCGTGTTCTCCACATCAGAAAGTTACCTAACGATGTGTCTGAAGCAGAGATCATTGCTCTGGGGCTTCCTTTCGGAAAGGTCACCAATATTCTCACACTGAAAGGCAAAAACCAGGCGTTTCTGGAGCTCAGCACGGAGGAAGCTGCTATGACAATGGTCAATTATTACTCCGCTGTGACGCCTCATGTCCGTAGTGTGCCTGTCTACATACAGTATTCCAATCACAAAGAACTCAAGACTGACAATTCAAGCCAGTCAGGTGGGACTTCCACATCAGGGTCCAACTCTAGTGACGGTAGCGGTTCGGCCTCCAGTCCAGTGCTAAGGATAATCATAGATAACATGTTTTACCCTGTCACCCTGGATGTGCTGCAGCAGATTTTCTCAAAGTTTGGCACCGTCATGAAAATCATCACATTCACCAAGAACAATCAGTTTCAAGCCCTGTTGCAGTACAACGATCCAGCTTGTGCGCAGCAAGCTAAAGTGGCTCTAGATGGTCAGAACATTTACAACGCCTGCTGTACTCTTCGTATAGACTACTCAAAGCTTGTCAATCTGAATGTGAAATACAATAACGATAAGAGCAGGGATTATACCAGACCGGAGCTTCCAGCTGGAGATGGGCAGCCCGCTTTGGATGTTGCTGCTGCCTTGAGTAAAGACTCCAGTTCCCTGCTTGGGAAGATCCCTGGTGCTCTGAGCCCGTTGAGTGCGGCTGCTGCTGCCGCTGCGGCTGCTGGAAGAGTGGCTCTGTCCGGGCACTCTAGCTCTGGTGGTGTGCTGCTCGTTAGCAATCTAAACGAAGAGATGGTTACGCCCCACAGTCTGTTTACCCTCTTCGGAGTTTATGGAGACGTGCAGCGCGTGAAGATCCTTTTTAATAAGAAAGACAGCGCACTGATACAGATGGCCGATATGAACCAGGCTCAGCTTGCGATGAGCCATCTAAACGGTCAGAAGATGTTTTCAAAGATCATCAGAGTCACAATGTCCAAGCACCAGACCGTTCAGCTGCCGAGAGACGGTTTAGATGACCAGGGTCTCACCAAAGACTTCACCAACTCGCCGCTACATCGCTTCAAAAAGCCTGGCTCCAAGAACTTCCAGAACATCTTCCCTCCTTCTGCCACGCTGCATCTGTCAAACATCCCGCAAGACGTTACTGAAGAAGACCTCAGAGTCCTGTTCTCCAACTCCGGCGGCACTGTGAAAGCTTTCAAGTTTTTCCAAGATCATAAAATGGCCCTGATTCAGATGTCGACCATCGAAGAAGCCATTCAATGCCTGATCGACCTCCACAATTACAACATGGGTAATAACCACCACCTGAAGGTCTCCTTTTCCAAATCCACCATCTGAAACGTAACCCGAGAGGTCTCGATCTCAACCTTTTTTTCTATCGTCGCCTGTTGACTGTTTCAATACACTGGGGACCATGCGTTTCTTTTTCCAAGATTCATTCCTAAAGAAGATGTCTAAAGAAAGAAATATTGTGACTGATTTTCCaaggaccttttttttttttaacaccgtTTCCCTATCGTGGGCACTCTGATGTGCTAGAAAGCTGTTGTGGTGTAAAGTCCTGATCCcc
>TCONS_00046572
ATGGTTACGCCCCACAGTCTGTTTACCCTCTTCGGAGTTTATGGAGACGTGCAGCGCGTGAAGATCCTTTTTAATAAGAAAGACAGCGCACTGATACAGATGGCCGATATGAACCAGGCTCAGCTTGCGATGAGCCATCTAAACGGTCAGAAGATGTTTTCAAAGATCATCAGAGTCACAATGTCCAAGCACCAGACCGTTCAGCTGCCGAGAGACGGTTTAGATGACCAGGGTCTCACCAAAGACTTCACCAACTCGCCGCTACATCGCTTCAAAAAGCCTGGCTCCAAGAACTTCCAGAACATCTTCCCTCCTTCTGCCACGCTGCATCTGTCAAACATCCCGCAAGACGTTACTGAAGAAGACCTCAGAGTCCTGTTCTCCAACTCCGGCGGCACTGTGAAAGCTTTCAAGTTTTTCCAAGATCATAAAATGGCCCTGATTCAGATGTCGACCATCGAAGAAGCCATTCAATGCCTGATCGACCTCCACAATTACAACATGGGTAATAACCACCACCTGAAGGTCTCCTTTTCCAAATCCACCATCTGAAACG
>TCONS_00046573
tgtgtgtgtgtgtatatatatctatacataTCTGAGTCTTCTGTCAGGTTGTGATTAGTTTTCTCCATCTCGATAGACATTCTGTGAGTCTATCAGTCCATCTTTCCACTCTCTGAGTCTCACTCCTCACTCTTTCCTCCGTCTCTGGCTTTCTCTCCGGCTGCTGCTGCTCTGTTCACAGGAGTTTATGGAGACGTGCAGCGCGTGAAGATCCTTTTTAATAAGAAAGACAGCGCACTGATACAGATGGCCGATATGAACCAGGCTCAGCTTGCGATGAGCCATCTAAACGGTCAGAAGATGTTTTCAAAGATCATCAGAGTCACAATGTCCAAGCACCAGACCGTTCAGCTGCCGAGAGACGGTTTAGATGACCAGGGTCTCACCAAAGACTTCACCAACTCGCCGCTACATCGCTTCAAAAAGCCTGGCTCCAAGAACTTCCAGAACATCTTCCCTCCTTCTGCCACGCTGCATCTGTCAAACATCCCGCAAGACGTTACTGAAGAAGACCTCAGAGTCCTGTTCTCCAACTCCGGCGGCACTGTGAAAGCTTTCAAGTTTTTCCA

Function

symbol description
ptbp2a Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be active in nucleus. Orthologous to human PTBP2 (polypyrimidine tract binding protein 2).

GO:

id name namespace
GO:0033119 negative regulation of RNA splicing biological_process
GO:0006397 mRNA processing biological_process
GO:0006417 regulation of translation biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-141 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be active in nucleus. Orthologous to human PTBP2 (polypyrimidine tract binding protein 2).

Ensembl:

ensembl_id ENSDARG00000101947

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046571 False 1882 mRNA 0.48 14 30835929 30862168
TCONS_00046572 False 556 mRNA 0.48 5 30836160 30843250
TCONS_00046573 True 569 lncRNA 0.48 3 30837447 30840319

Neighbor

gene id symbol gene type direction distance location
XLOC_023550 NA coding downstream 459711 30329467 ~ 30376218 (-)
XLOC_023549 snx7 coding downstream 560194 30225967 ~ 30275735 (-)
XLOC_023548 plppr4b coding downstream 739263 30053651 ~ 30096666 (-)
XLOC_023547 palmdb coding downstream 838739 29964976 ~ 29997190 (-)
XLOC_023546 CR352310.2 coding downstream 872071 29961238 ~ 29963858 (-)
XLOC_023552 NA coding upstream 41275 30903443 ~ 30911865 (-)
XLOC_023553 NA coding upstream 65520 30927688 ~ 30972863 (-)
XLOC_023554 NA coding upstream 177852 31040020 ~ 31081433 (-)
XLOC_023555 hccsb coding upstream 219336 31081504 ~ 31092711 (-)
XLOC_023556 tlcd4a coding upstream 236366 31098534 ~ 31140356 (-)
XLOC_023665 dre-mir-735 misc upstream 7315793 38177961 ~ 38178027 (-)
XLOC_023545 NA non-coding downstream 913109 29921076 ~ 29922820 (-)
XLOC_023538 CR847965.1 non-coding downstream 1361954 29473856 ~ 29473975 (-)
XLOC_023537 CR388050.1 non-coding downstream 1783103 29052708 ~ 29052826 (-)
XLOC_023536 CR388050.3 non-coding downstream 1801189 29034624 ~ 29034740 (-)
XLOC_023563 NA non-coding upstream 592918 31455086 ~ 31458194 (-)
XLOC_023564 CABZ01029420.1 non-coding upstream 778144 31640312 ~ 31640427 (-)

Expression


Co-expression Network