XLOC_023554


Basic Information

Item Value
gene id XLOC_023554
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 31040020 ~ 31081433 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046875
GGCTGGTAATTCAGTaaggctaataattcggacttcaactgtatatttatccTAAAGGTGCAACAGTCCATCCAGTGAGGGCTTTTTTTGCTACACCTCGAGGACGATCAGAGGATCCTCGTGTCTGCGAGTAGGTGTGGGAAAGAAATCTTCACTCACGGCCCAGAATAACCTCGTCCTCTGGGGAAGAACTTTCCACCTCTCAGTCCTGTTCAGATGCCAGCCTGATTTGGTATATTCCTGTATGTTTGGAAAGAGCCTTCACCCTCCTGGAGCGCAGGTGTTGATCAGCACGAGATCTCCAAACAATCTCAACCTTCGGCCTCCAAAGGTGACAGCAGGGTGGACATTTGGGAAGGATTAGACCCTCGTATAATCCGGCTCTTAGCTGTGTGCTCGAGAGGTGTGTGTATTAGTTTTTTGCCATcataagtgtgtgcgtgtgtgtgtgtgtaagtgtgtacgGGCCCAGAGGGGTGTGAGGATTACAG
>TCONS_00046574
GTTTGTACACCTGTTTTTGTACAACTGATGTTTATTTTAGCGCCATCTACTGTCAGAGAGTGAAGTTACATTTTCAATTACCCCATTCAATGCTTTCTTGAAGTGTCAAGTGGAATGTGACACTAAAAACTGTATTCTGATGCtatacagcagtgtttctcatcTATGTTCCTGGAggcaccagctctgcacatttccctGTCTCCTTAAtctaacacacctgattcagatcattagctcattagcaaagactgaaagacatgtaatgggtgtgacagacaaaggtgACATCCATGTAGTATTTGGCGGCCCTCCAGGAAAGTTGGTTGGGAAACACAACTGTAAAGTACGTTATAATTAAAAGCGAAAGTGTTTCAAAGTTCTCTAAACGTCGTGCTTATAGATTGAACCACCTGAAtgagaatcagaaagagctttgccagGTGCAACAGTCCATCCAGTGAGGGCTTTTTTTGCTACACCTCGAGGACGATCAGAGGATCCTCGTGTCTGCGAGTAGGTGTGGGAAAGAAATCTTCACTCACGGCCCAGAATAACCTCGTCCTCTGGGGAAGAACTTTCCACCTCTCAGTCCTGTTCAGATGCCAGCCTGATTTGGGTTGCCAGTGCAGGTGGCCAGAGAAGTTTCACACATTTCCACAAAAAAAGTAAAGAGAATGACAAGAACTGACTCTGGACCTGTAAgttaagtttcattttattttatgaatgcatttttgtttttacatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117595

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046875 False 491 lncRNA 0.49 2 31040020 31076529
TCONS_00046574 True 750 lncRNA 0.42 3 31055418 31081433

Neighbor

gene id symbol gene type direction distance location
XLOC_023553 NA coding downstream 67157 30927688 ~ 30972863 (-)
XLOC_023552 NA coding downstream 128155 30903443 ~ 30911865 (-)
XLOC_023551 ptbp2a coding downstream 177852 30835929 ~ 30862168 (-)
XLOC_023550 NA coding downstream 663802 30329467 ~ 30376218 (-)
XLOC_023549 snx7 coding downstream 764285 30225967 ~ 30275735 (-)
XLOC_023555 hccsb coding upstream 71 31081504 ~ 31092711 (-)
XLOC_023556 tlcd4a coding upstream 17101 31098534 ~ 31140356 (-)
XLOC_023557 cnn3a coding upstream 88929 31170362 ~ 31194847 (-)
XLOC_023558 alg14 coding upstream 119762 31201195 ~ 31223232 (-)
XLOC_023559 acp5b coding upstream 212586 31294019 ~ 31306724 (-)
XLOC_023665 dre-mir-735 misc upstream 7096528 38177961 ~ 38178027 (-)
XLOC_023545 NA non-coding downstream 1117200 29921076 ~ 29922820 (-)
XLOC_023538 CR847965.1 non-coding downstream 1566045 29473856 ~ 29473975 (-)
XLOC_023563 NA non-coding upstream 373653 31455086 ~ 31458194 (-)
XLOC_023564 CABZ01029420.1 non-coding upstream 558879 31640312 ~ 31640427 (-)
XLOC_023565 NA non-coding upstream 628068 31709501 ~ 31717481 (-)
XLOC_023566 NA non-coding upstream 673814 31755247 ~ 31756351 (-)
XLOC_023567 CT737162.3 non-coding upstream 705030 31786463 ~ 31786577 (-)

Expression


Co-expression Network