XLOC_023556 (tlcd4a)


Basic Information

Item Value
gene id XLOC_023556
gene name tlcd4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 31098534 ~ 31140356 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046578
ATAACTTGAGACTCATTAGTGTGCATTTCTGACAGCGGGAGATGTTGGAGCTGATTCATGAGGCTGTGTTTTTCTATAACTCGTGtctgtgtcatttgtttgttcttcACCTTGTGTTTCCAGGGTCAAGGAATGTTGCCTTATTTTGCTAACTTCCGTCTGCTTGCAGAGTTTTCCACACCCTGTGTTAACCAACGCTGGTTCTTTGAAGTATTAGGTTACCCCAAATCCTCCAGGCCCAACATGGCTAACGGTGTGCTGATGGCGGCGGTGTTTTTCCTGGTGCGCATCGCCGTCATGCCCGTTTACTACAGCCGGATGTGCTCCGTGTATGGCACCGAAGCCTTCTACAGGGTTTCGTTTGGCGGCCGGAGCGCTTGGATATTCTCTAGCATCTGCCTGGACATCATGAACGTCATGTGGATGCATAAAATCTTTCGCGGCTGCTATAAAGTCTTGCAATCCAGCCGGAAATCCAAAGCTGAGAGCCAAGAGAACGGAAAAACAGATTGAGCTGGGGGGAGAAGTGtgaattttcactttttacacgACTTGCTCACTGACTGGGTTGTTGTGTTATTTAGAAATGAACAACCCAAGGACACTATGAAGTAGTGACCGgagattaaaaacaaacaaacaa
>TCONS_00046579
AAACATACAGCCAGGCATCAACACACAACATCATCCTCAACATGTTTTTTTCGCCGACTCGCGCTTATGAAACACATCGCAGGCTGAGATTGTTATAAGAACCTGTCGTTTCCGTGTTTGATATGAAATCATGCATTTCATATCGccgtggagagaggagaaccatGCATGTGTCTGACTGACGGAAAAACACGGATTTAATCAGTCCATGTTTTCAGACACCATGCGCAACTGACCCACAGACACCATTGATGTTCGATAAAAGTGGGGTCGGGTGGCCATGGACCCCTTCAGCCAGCTGATCCTGCTCATCTCGGTGGtgagttttttctttttccagTGGCTCTTTCACAGCGTGAGCCCCTGGGCGTCGTCCAGAATCAGCCCTGGCTTCCTCAAACTCACCCACAAACAGAAGATCGAGTGGAACTCAAGGACTGTGTCCACGCTCCACGCTCTGCTGGTCGGCCTCTTCTGCCTCTACATCTTGTTCTTCGATGAGGCCGTCAATCAGGACCCCGTATGGGGAGATCCTACTCTGGTGAAGATAAACGTGAGCATTACTACAGGCTACCTCATATCTGaTCTGCTGCTTATATTTTACTATTGGAGAGCAATAGGAGACAAGTTTTTTGTAATCCACCACCTGGCAGCATTGTATGCTTACTACTATGTACTGGGTCAAGGAATGTTGCCTTATTTTGCTAACTTCCGTCTGCTTGCAGAGTTTTCCACACCCTGTGTTAACCAACGCTGGTTCTTTGAAGTATTAGGTTACCCCAAATCCTCCAGGCCCAACATGGCTAACGGTGTGCTGATGGCGGCGGTGTTTTTCCTGGTGCGCATCGCCGTCATGCCCGTTTACTACAGCCGGATGTGCTCCGTGTATGGCACCGAAGCCTTCTACAGGGTTTCGTTTGGCGGCCGGAGCGCTTGGATATTCTCTAGCATCTGCCTGGACATCATGAACGTCATGTGGATGCATAAAATCTTTCGCGGCTGCTATAAAGTCTTGCAATCCAGCCGGAAATCCAAAGCTGAGAGCCAAGAGAACGGAAAAACAGATTGAGCTGGGGGGAGAAGTGtgaattttcactttttacacgACTTGCTCACTGACTGGGTTGTTGTGTTATTTAGAAATGAACAACCCAAGGACACTATGAAGTAGTGAC
>TCONS_00046580
ATGGACCCCTTCAGCCAGCTGATCCTGCTCATCTCGGTGGtgagttttttctttttccagTGGCTCTTTCACAGCGTGAGCCCCTGGGCGTCGTCCAGAATCAGCCCTGGCTTCCTCAAACTCACCCACAAACAGAAGATCGAGTGGAACTCAAGGACTGTGTCCACGCTCCACGCTCTGCTGGTCGGCCTCTTCTGCCTCTACATCTTGTTCTTCGATGAGGCCGTCAATCAGGACCCCGTATGGGGAGATCCTACTCTGGTGAAGATAAACGTGAGCATTACTACAGGCTACCTCATATCTGaTCTGCTGCTTATATTTTACTATTGGAGAGCAATAGGAGACAAGTTTTTTGTAATCCACCACCTGGCAGCATTGTATGCTTACTACTATGTACTGGTGAGTTCCCTGTTGTCCCATAACAGAACATGCAGGCAAGATGGGAAAGAGACAACCAAGAGTGAGCAGTGGTGGTGTCAGGTGTGCAGCTGGTGCTCAAAGCTCTGTGTTCCCTCCACTACACACTTTAAACAATAG

Function

symbol description
tlcd4a Predicted to be involved in lipid homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in female organism. Orthologous to several human genes including TLCD4 (TLC domain containing 4).

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0034440 lipid oxidation biological_process
GO:0032868 response to insulin biological_process
GO:0032869 cellular response to insulin stimulus biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0071375 cellular response to peptide hormone stimulus biological_process
GO:0044248 cellular catabolic process biological_process
GO:0071417 cellular response to organonitrogen compound biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:1901653 cellular response to peptide biological_process
GO:0071702 organic substance transport biological_process
GO:0019395 fatty acid oxidation biological_process
GO:0010243 response to organonitrogen compound biological_process
GO:0033036 macromolecule localization biological_process
GO:1901698 response to nitrogen compound biological_process
GO:1901699 cellular response to nitrogen compound biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0043168 anion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090402-1 Predicted to be involved in lipid homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in female organism. Orthologous to several human genes including TLCD4 (TLC domain containing 4).

Ensembl:

ensembl_id ENSDARG00000098451

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046578 False 643 lncRNA 0.47 2 31098534 31100851
TCONS_00046579 False 1175 mRNA 0.48 7 31098558 31140356
TCONS_00046580 True 537 mRNA 0.50 4 31116614 31123365

Neighbor

gene id symbol gene type direction distance location
XLOC_023555 hccsb coding downstream 5823 31081504 ~ 31092711 (-)
XLOC_023554 NA coding downstream 17101 31040020 ~ 31081433 (-)
XLOC_023553 NA coding downstream 125671 30927688 ~ 30972863 (-)
XLOC_023552 NA coding downstream 186669 30903443 ~ 30911865 (-)
XLOC_023551 ptbp2a coding downstream 236366 30835929 ~ 30862168 (-)
XLOC_023557 cnn3a coding upstream 30006 31170362 ~ 31194847 (-)
XLOC_023558 alg14 coding upstream 60839 31201195 ~ 31223232 (-)
XLOC_023559 acp5b coding upstream 153663 31294019 ~ 31306724 (-)
XLOC_023560 abcd3a coding upstream 170284 31310640 ~ 31332087 (-)
XLOC_023561 cngb3.1 coding upstream 262538 31402894 ~ 31425799 (-)
XLOC_023665 dre-mir-735 misc upstream 7037605 38177961 ~ 38178027 (-)
XLOC_023550 NA non-coding downstream 722316 30329467 ~ 30376218 (-)
XLOC_023545 NA non-coding downstream 1175714 29921076 ~ 29922820 (-)
XLOC_023563 NA non-coding upstream 314730 31455086 ~ 31458194 (-)
XLOC_023564 CABZ01029420.1 non-coding upstream 499956 31640312 ~ 31640427 (-)
XLOC_023565 NA non-coding upstream 569145 31709501 ~ 31717481 (-)
XLOC_023566 NA non-coding upstream 614891 31755247 ~ 31756351 (-)
XLOC_023567 CT737162.3 non-coding upstream 646107 31786463 ~ 31786577 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) tlcd4a LOC106570700 misc NC_048575.1 CM023229.2 22712577 ~ 22741263 (+)
bowfin (Amia calva) AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 misc CM030140.1 CM030140.1 15958704 ~ 15978855 (-)