XLOC_023557 (cnn3a)


Basic Information

Item Value
gene id XLOC_023557
gene name cnn3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 31170362 ~ 31194847 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046581
CGAGAGCCTCTGTTGTGTAAACTCACTGTGCGCGCGGATTATTCATGCACGCGGAGCGAAAAATCAACGCAACTGTGATTTTACTGCAACTTTAGGACTTTACTTCACTCATTATCTGTTGGCCTGTTTATTGACTCTACGGTAAAACTCAAAAAGTGAAACATGACCCAGTTTAACAAGGGACCTGCCTACGGATTATCCGCGGAGGTGAAAAACAAGATTGCACAGAAATATGACCTACAGAAGGAAGAGGAACTTCGTTTCTGGATTGAGGAGGTGACCGGTATGCCGATCGGAGATCACTTCCAGAAAGGGCTCAAGGATGGCGTCATACTGTGCGAattGATAAACAAGCTTCAGCCTGGATCtataaagaaaataaaccatTCACAGTTAAACTGGCACAAGTTAGAGAATCTTGGGAATTTCATCAAAGCCATTCTAGCCTACGGGCTGAAGCCCAATGACATCTTTGAAGCCAATGACCTCTTCGAAAACGGGAACATGACACAAGTTCAGACCACACTTCTCGCTTTGGCCAGTATGgcAAAAACCAAAGGCATGGAAACTAACATTGACATTGGTGTAAAATACGCAGACAAGCAGCAAAGAAATTTTgatgatgagaagatgaaggCTGGCCAGTGTGTCATCGGACTTCAGATGGGTACCAACAAATGCGCAAGTCAGGCTGGAATGACGGCCTACGGGACCAGGAGACATCTTTACGACCCCAAAACACAAACAGAGAAACCCTATGACCAGACCACAATCAGCCTGCAAATGGGCACCAACAAAGGTGCAAGCCAGgcTGGTATGTCCGCTCCAGGCACCAGAAGGGACATCTATGACCAGAAGGCAGCTCTGCAACCAATGGACAACTCCACCATTTCTTTGCAAATGGGAACCAATAAGGTGGCCTCTCAGAAAGGCATGAGCGTGTACGGGTTGGGACGGCAGGTTTACGACCCCAAGTATTGCGCCACTCCAACAGAGCCTATGATCCACGCCAATGGCAGCCAGGGAACAGGCACAAACGGCTCAGAAATCAGTGATAGTGACTATCAGGCGGAATACCAGGAGGAGGAGTACCAGGGCGAATACCATGATGAATACAGAGGGCACTATAACGACCAGGGCATCGACTACTAGAGAACGCTGCTGCGCTGATAGTCAAAGCAGTATTAACACAATGTATATCAACAGAGCAAGTCTTTTGCTATGCCTTTTGCTTCTCACATTTACCCTTCCTCTCCCAGCGCATGTGATTGGGTAAAACGATTGTGAGCGGTAAGATATCTCAAATCTGTCTAACCATGCGGTCACATTTACTTTTGCTCAGTGAAATTCAGAGGCAAAATCCATTCATTCCAATAGCAAGCAGCACAATTGGGAGTTGttgatttgaaataaaaaaaaatctgcttggtTTTGACAGTGTTTTTGCTACGCTAATGACAATGGACCATTTATTGCCGTTGAAATTTTGCTGAAATATTGCTCATGTGACCGCATGttgataatattaaatataatttttaaaaatgtttttatgaagTAAGGATGGCAAACTGTAAAAAGAAATGTCTAGTTTTGGAATGCGATTCATCTTTTTATGCCCTTCTCTTGTTTATTTTGCCCTCGCATCTTGGAGCGAATCGTTCTTAGCTAGTTTTAACGCTAATTCTCCTTTGGAAATCTTGCTCCACACCAACGCATGGCAGACGAAAGCCTTCTAAAGACATTCCTTCCTAAATCATTCCACTTGAAGTCATTCCATTTTAGAATTCCAAATGTCTGGAAATGTTACAAGCTACAAATGTTACCGTTTAAAAGATTAACTGACTGGACGACCAAAAACATTCCGCTATTGCTTCGTTTTTATTTTGTGCCataatattcagaaaaaaaaagattcccaTTGTATTTATTGCCCTGCTTTTCATTATAAACCTTCTGTCATTTGGTTCTTTTATGAATAAATTTTATCTTATAAAGTA

Function

symbol description
cnn3a Predicted to enable actin binding activity and calmodulin binding activity. Predicted to act upstream of or within actomyosin structure organization. Predicted to be active in cytoskeleton. Is expressed in several structures, including cardiovascular system; head mesenchyme; intermediate cell mass of mesoderm; mesoderm; and notochord. Orthologous to human CNN3 (calponin 3).

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0005516 calmodulin binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5130 Predicted to enable actin binding activity and calmodulin binding activity. Predicted to act upstream of or within actomyosin structure organization. Predicted to be active in cytoskeleton. Is expressed in several structures, including cardiovascular system; head mesenchyme; intermediate cell mass of mesoderm; mesoderm; and notochord. Orthologous to human CNN3 (calponin 3).

Ensembl:

ensembl_id ENSDARG00000099510

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046581 True 2000 mRNA 0.42 7 31170362 31194847

Neighbor

gene id symbol gene type direction distance location
XLOC_023556 tlcd4a coding downstream 30006 31098534 ~ 31140356 (-)
XLOC_023555 hccsb coding downstream 77651 31081504 ~ 31092711 (-)
XLOC_023554 NA coding downstream 88929 31040020 ~ 31081433 (-)
XLOC_023553 NA coding downstream 197499 30927688 ~ 30972863 (-)
XLOC_023552 NA coding downstream 258497 30903443 ~ 30911865 (-)
XLOC_023558 alg14 coding upstream 6348 31201195 ~ 31223232 (-)
XLOC_023559 acp5b coding upstream 99172 31294019 ~ 31306724 (-)
XLOC_023560 abcd3a coding upstream 115793 31310640 ~ 31332087 (-)
XLOC_023561 cngb3.1 coding upstream 208047 31402894 ~ 31425799 (-)
XLOC_023562 cngb3.2 coding upstream 236043 31430890 ~ 31452923 (-)
XLOC_023665 dre-mir-735 misc upstream 6983114 38177961 ~ 38178027 (-)
XLOC_023550 NA non-coding downstream 794144 30329467 ~ 30376218 (-)
XLOC_023545 NA non-coding downstream 1247542 29921076 ~ 29922820 (-)
XLOC_023563 NA non-coding upstream 260239 31455086 ~ 31458194 (-)
XLOC_023564 CABZ01029420.1 non-coding upstream 445465 31640312 ~ 31640427 (-)
XLOC_023565 NA non-coding upstream 514654 31709501 ~ 31717481 (-)
XLOC_023566 NA non-coding upstream 560400 31755247 ~ 31756351 (-)
XLOC_023567 CT737162.3 non-coding upstream 591616 31786463 ~ 31786577 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000082_02686245_02689228 CNN3B, CNN3A, CNN3 coding CI01000082 null 2685376 ~ 2689228 (-)