XLOC_023558 (alg14)


Basic Information

Item Value
gene id XLOC_023558
gene name alg14
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 31201195 ~ 31223232 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046582
aacctGTCCCTCTTGGCTTTCCGTAGCAGCTGTACGTGTGCTCTGATGACTGCTTTCTCAAAACTACAACACGCATTCCAGTTTTACTTTATAAAGTTGTTTGCAGTGTAAATGCTTGCTCTTTCCTGACAAACATGAGTCTACTAATGTTTTGAGACTCAATTATTAAACCCCTAATGAGCGGGTATCTTGGTACCTGATGGCATTGTTTGTAGTGCTGAGTGGTGTCATTCTCACCGCTTTATTATTAGTGACAGGGTTTATTTTACGATTATTTGTGGTCTTGCGAAATGGACCTGAATATAAACCTGGACAGAAGGGATCTGTATCAGTGCTGGTGGTGGCTGGATCAGGAGGACACACCACAGAAATCATCCGTCTGCTGGGGAGTTTATCTCACTCTTATAACCCTCGACATTATGTGATCGCAGACACCGATAAAATGAGCGAAGAGAAGATCCGAACATTTGaagcagagagagaaaaaagtgaTTCAACCTCTCagTTTACTCTCCAGCGGATTCCTCGCAGTCGTGAAGTGCGTCAGTCCTGGAGTTCCTCTGTTCTGAGTTCACTGAACGCTCTGTTCTCCTCCGTACCGCTGGTCTTCAGGCTTCGGCCGGATGTGgtgttGTGCAATGGTCCCGGGACGTGTGTTCCCCTGTGTGCCGCAGGGCTGCTCCTAGGAATTCTGGGTCTTAAAAGAGTGTTGATTGTCTACGTGGAGAGCATCTGTCGTGTAAAAACACTTTCTCTGTCCGGGAAGATGCTCTACTACATTTCTGACTACTTCTTTGTGCAGTGGGCACAGCTCAAAGACAAATACCCAAATGCCATCTACATGGGAAGACTGGTTTGATGAATACACACAATATAAAGAAACCCAGCTTTTTACA
>TCONS_00046583
CTGCTTTCTCAAAACTACAACACGCATTCCAGTTTTACTTTATAAAGTTGTTTGCAGTGTAAATGCTTGCTCTTTCCTGACAAACATGAGTCTACTAATGTTTTGAGACTCAATTATTAAACCCCTAATGAGCGGGTATCTTGGTACCTGATGGCATTGTTTGTAGTGCTGAGTGGTGTCATTCTCACCGCTTTATTATTAGTGACAGGGTTTATTTTACGATTATTTGTGGTCTTGCGAAATGGACCTGAATATAAACCTGGACAGAAGGGATCTGTATCAGTGCTGGTGGTGGCTGGATCAGGAGGACACACCACAGAAATCATCCGTCTGCTGGGGAGTTTATCTCACTCTTATAACCCTCGACATTATGTGATCGCAGACACCGATAAAATGAGCGAAGAGAAGATCCGAACATTTGaagcagagagagaaaaaagtgaTTCAACCTCTCagTTTACTCTCCAGCGGATTCCTCGCAGTCGTGAAGTGCGTCAGTCCTGGAGTTCCTCTGTTCTGAGTTCACTGAACGCTCTGTTCTCCTCCGTACCGCTGGTCTTCAGGCTTCGGCCGGATGTGGTGGGTTTTCTCTTCTCTCATTTATCCTCCATCACGTCTTCATCAAATATTCATTTCCTCTTTTCCTCC

Function

symbol description
alg14 Predicted to be involved in dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in endoplasmic reticulum and nuclear membrane. Predicted to be integral component of membrane. Predicted to be part of UDP-N-acetylglucosamine transferase complex. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 15. Orthologous to human ALG14 (ALG14 UDP-N-acetylglucosaminyltransferase subunit).

GO:

id name namespace
GO:0006488 dolichol-linked oligosaccharide biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043541 UDP-N-acetylglucosamine transferase complex cellular_component

KEGG:

id description
ko00510 N-Glycan biosynthesis
ko00513 Various types of N-glycan biosynthesis
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-041010-195 Predicted to be involved in dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in endoplasmic reticulum and nuclear membrane. Predicted to be integral component of membrane. Predicted to be part of UDP-N-acetylglucosamine transferase complex. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 15. Orthologous to human ALG14 (ALG14 UDP-N-acetylglucosaminyltransferase subunit).

Ensembl:

ensembl_id ENSDARG00000103093

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046582 False 896 mRNA 0.45 4 31201195 31223232
TCONS_00046583 True 648 processed_transcript 0.44 3 31218823 31223183

Neighbor

gene id symbol gene type direction distance location
XLOC_023557 cnn3a coding downstream 6348 31170362 ~ 31194847 (-)
XLOC_023556 tlcd4a coding downstream 60839 31098534 ~ 31140356 (-)
XLOC_023555 hccsb coding downstream 108484 31081504 ~ 31092711 (-)
XLOC_023554 NA coding downstream 119762 31040020 ~ 31081433 (-)
XLOC_023553 NA coding downstream 228332 30927688 ~ 30972863 (-)
XLOC_023559 acp5b coding upstream 70787 31294019 ~ 31306724 (-)
XLOC_023560 abcd3a coding upstream 87408 31310640 ~ 31332087 (-)
XLOC_023561 cngb3.1 coding upstream 179662 31402894 ~ 31425799 (-)
XLOC_023562 cngb3.2 coding upstream 207658 31430890 ~ 31452923 (-)
XLOC_023563 NA coding upstream 231854 31455086 ~ 31458194 (-)
XLOC_023665 dre-mir-735 misc upstream 6954729 38177961 ~ 38178027 (-)
XLOC_023552 NA non-coding downstream 289330 30903443 ~ 30911865 (-)
XLOC_023550 NA non-coding downstream 824977 30329467 ~ 30376218 (-)
XLOC_023545 NA non-coding downstream 1278375 29921076 ~ 29922820 (-)
XLOC_023564 CABZ01029420.1 non-coding upstream 417080 31640312 ~ 31640427 (-)
XLOC_023565 NA non-coding upstream 486269 31709501 ~ 31717481 (-)
XLOC_023566 NA non-coding upstream 532015 31755247 ~ 31756351 (-)
XLOC_023567 CT737162.3 non-coding upstream 563231 31786463 ~ 31786577 (-)

Expression


Co-expression Network