G442021


Basic Information

Item Value
gene id G442021
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77269860 ~ 77272749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU500257
CTGATTGTACATAATAATATTGTACACAATTTCATACCAAAATGTGTATCTTTTGTGAACCTGATATGGTTGAGATTGTGTTATGAAAATATAAGCCAAAATAGTCATTGGCTTATTATGGCTTATTATCAGTAGATCTGACCCAGATGATAAAgtttcaaatgtattttctatATGTAATAAATATATTGCCAATCTTACTCACCAGAGCTCTTGCATCAAAATGAAatagttaaaggcccagtgctgtcaaaaacatgattgtcctgtgttttatatatatctccacactatgagtttggaacaatactgtgaaattgtgaaaattatgataatgtccttttagtgtaagaactgtttgaaaagaccgcctgaaatttcagcctgttttgttgggatggagttttgtcctgcctggtgacatcaccaggcagtaaattagttaatagaccaaaaGGAAACAGTTCCAAACATCTCAGCCAATAACAGCTTGTTTTCAGTGTTCCCCTCTCAACTCAGACCACACCCAGACAGTCAAAATTATTGGtagagaaattgctctttgctaagaagctatttttgtttctttttggccATTTTACGTTAagacaatcacagtaaggtacttaactgttacccagaaatgattggATATTGAGACAAAAGCATCTGCATTGGACCTTAAACATTGCCATATACTGGCTCCATCCTGGAATCTTAATGGTGTACTTGTTCTGACAAACATTCTACTACTTATTAATGAACTCATCCTGATTATTTGTGATCTCAAGTAAAACATTTattgtttctctctgtgtatatAGACATATGGGCACTTAGATGTATATAATGCATGTTAGCAATGAGTACATTGATTGTGAGGGACAAACAACTGTGTTGAGTTGTATTGTGTTGCTTCAGTTGTAATATCATGTGCCATGGAAAGCTAATGCAAAGCCAAAAGAGTCTCACTGTCATAGAATCCATGAATGTTCTTTGGTGTGTCTTTACTTTTTGTGTTTGGGGGGTTTGAATAGAAGTACATGTTTTTTTAATAGGAGAAAGGGGATGTTTTTTGGAAGGAAAATATGTTTGGAAGAGAAATAGAAAACCCAATACACTAGGAAAATTGGCATTAGACCCTACTTATGTATAATGTATTTTAAGTGTTGCTTGCTGCAGATCCTGATAGAGAAGGTATGTTATCTCAAAGCTTTGAGTCTTAGTTGTATGTTAACATGTATATATGTCTCCACAGAGGTAAACAGAGTATAAATATATAGttgtgtataaaaaaatatatatattttaaagtatTTACCTAGAGCCAATCTATTGTTGACTCTTTGAGTAC
>TU500255
TTTGTAATCCTTAGTCTCACGTTTGATTGGTGTTACACAGCTTGGCATTAGGCATTATGGGTTCTCTTGTACTATATACAAATAGTATTGTAAAGCTATGTATATTTTTGTGAATATTGTAAATAATCTAAAATGTTATAAGGCGAAAGTCAAAATAGAATGTGCAAGGTTGGTGCTTTAGAAGCATTCTAAATATAATGTTGTTAAATAAGACATTGTTAAGTGGCTACGTTTGGCCAGTATTCCCAAATATATTATACTGTTTGTGTCCACTGTGAGGTAACTAAAATGCTACATGTTGCAGTGTTGGATCATAAATATGCAGTATTGTTAAAAGTGAACTTGGGGCACAGTAATTGGGCATTACatttaaaacacaaaacaatGTGTCTTTCTATCTGGGTCTGACACCACTAGAACTTCAGCTGTTTGTATTCTGATTGTACATAATAATATTGTACACAATTTCATACCAAAATGTGTATCTTTTGTGAACCTGATATGGTTGAGATTGTGTTATGAAAATATAAGCCAAAATAGTCATTGGCTTATTATGGCTTATTATCAGTAGATCTGACCCAGATGATAAAgtttcaaatgtattttctatATGTAATAAATATATTGCCAATCTTACTCACCAGAGCTCTTGCATCAAAATGAAatagttaaaggcccagtgctgtcaaaaacatgattgtcctgtgttttatatatatctccacactatgagtttggaacaatactgtgaaattgtgaaaattatgataatgtccttttagtgtaagaactgtttgaaaagaccgcctgaaatttcagcctgttttgttgggatggagttttgtcctgcctggtgacatcaccaggcagtaaattagttaatagaccaaaaGGAAACAGTTCCAAACATCTCAGCCAATAACAGCTTGTTTTCAGTGTTCCCCTCTCAACTCAGACCACACCCAGACAGTCAAAATTATTGGtagagaaattgctctttgctaagaagctatttttgtttctttttggccATTTTACGTTAagacaatcacagtaaggtacttaactgttacccagaaatgattggATATTGAGACAAAAGCATCTGCATTGGACCTTAAACATTGCCATATACTGGCTCCATCCTGGAATCTTAATGGTGTACTTGTTCTGACAAACATTCTACTACTTATTAATGAACTCATCCTGATTATTTGTGATCTCAAGTAAAACATTTattgtttctctctgtgtatatAGACATATGGGCACTTAGATGTATATAATGCATGTTAGCAATGAGTACATTGATTGTGAGGGACAAACAACTGTGTTGAGTTGTATTGTGTTGCTTCAGTTGTAATATCATGTGCCATGGAAAGCTAATGCAAAGCCAAAAGAGTCTCACTGTCATAGAATCCATGAATGTTCTTTGGTGTGTCTTTACTTTTTGTGTTTGGGGGGTTTGAATAGAAGTACATGTTTTTTTAATAGGAGAAAGGGGATGTTTTTTGGAAGGAAAATATGTTTGGAAGAGAAATAGAAAACCCAATACACTAGGAAAATTGGCATTAGACCCTACTTATGTATAATGTATTTTAAGTGTTGCTTGCTGCAGATCCTGATAGAGAAGGTATGTTATCTCAAAGCTTTGAGTCTTAGTTGTATGTTAACATGTATATATGTCTCCACAGAGGTAAACA
>TU500258
TCACCAGAGCTCTTGCATCAAAATGAAatagttaaaggcccagtgctgtcaaaaacatgattgtcctgtgttttatatatatctccacactatgagtttggaacaatactgtgaaattgtgaaaattatgataatgtccttttagtgtaagaactgtttgaaaagaccgcctgaaatttcagcctgttttgttgggatggagttttgtcctgcctggtgacatcaccaggcagtaaattagttaatagaccaaaaGGAAACAGTTCCAAACATCTCAGCCAATAACAGCTTGTTTTCAGTGTTCCCCTCTCAACTCAGACCACACCCAGACAGTCAAAATTATTGGtagagaaattgctctttgctaagaagctatttttgtttctttttggccATTTTACGTTAagacaatcacagtaaggtacttaactgttacccagaaatgattggATATTGAGACAAAAGCATCTGCATTGGACCTTAAACATTGCCATATACTGGCTCCATCCTGGAATCTTAATGGTGTACTTGTTCTGACAAACATTCTACTACTTATTAATGAACTCATCCTGATTATTTGTGATCTCAAGTAAAACATTTattgtttctctctgtgtatatAGACATATGGGCACTTAGATGTATATAATGCATGTTAGCAATGAGTACATTGATTGTGAGGGACAAACAACTGTGTTGAGTTGTATTGTGTTGCTTCAGTTGTAATATCATGTGCCATGGAAAGCTAATGCAAAGCCAAAAGAGTCTCACTGTCATAGAATCCATGAATGTTCTTTGGTGTGTCTTTACTTTTTGTGTTTGGGGGGTTTGAATAGAAGTACATGTTTTTTTAATAGGAGAAAGGGGATGTTTTTTGGAAGGAAAATATGTTTGGAAGAGAAATAGAAAACCCAATACACTAGGAAAATTGGCATTAGACCCTACTTATGTATAATGTATTTTAAGTGTTGCTTGCTGCAGATCCTGATAGAGAAGGTATGTTATCTCAAAGCTTTGAGTCTTAGTTGTATGTTAACATGTATATATGTCTCCACAGAGGTAAACA
>TU500256
tccgtgaagagcacatgcctccagcatgccagtggccattgaagatgagcatttgcccactgatgtcagttacgacgccgaagtgcagtcaggtcaagaccctggtgaggatgatgagcacGCAAATGAGCTTACCTAAGACAGCTTCTGACAGTTTGTGGCAAAATTCTTCGTTGTGCaaatccacagtttcatcagctgtccgagtggctggtctcagacaatcccgcaggtgaagaagtctGATGTGGAGGTcatgggttggcgtggttacatgtggtctgcggctgtgaggccggttgggcttattgccaaattctctaacgaggcggcttatggtagagaaattaacattaaatgatctggcaacggctctggtggacattcatgcagtgagcatgccaattgcaggctcccttaaaacttgacacatctgtggcattgtgttgtgtgataaaactgcccattttagagtggccttttattgcccccagcacaaggtgcacctatgtaatgatcatgctgtttaatcagcttcttgatataccacacctgtcaggtggatggattatcttggcaaaggagaaatgctcactaacaggtaaACAATATGCCAAAAAAATGTAgacaaataagctttttgtgcgtatggacatttctggtatcttttatttcagttcatgaaacattggaccttcactttacatgttgcatttatatttttgttcagtatagagaTGCTACCTCCTATCCTCATGCTATTTACAGTAGATAGGAGATGGCCAAATCAACCAGTTGAATCGGAGAGCAAAACCAGACAGTAAAGCATCCCATCATGTGCTATTAATCACTTGGAATGTGAAGTGACCTAATAACTTAGCAGAGGTGTAAATAGATAGATAGCTAGATGCCAAGACAAATGTGAAAGACAAAAGTAATGCAAACAATCACTTGATGATAACCCTGTTTGTAAGCCAGCTAGTTTAGCATGCTATCGGTTATAGTAGGACTTTGGCAACTCGTCCGTCTAAACGTACTGTTGTTACAAAATTGTTAATTAAGTATCAATGGTGTTTCTGTTGATATTGAGTGATGTATGCTTTGTAATCCTTAGTCTCACGTTTGATTGGTGTTACACAGCTTGGCATTAGGCATTATGGGTTCTCTTGTACTATATACAAATAGTATTGTAAAGCTATGTATATTTTTGTGAATATTGTAAATAATCTAAAATGTTATAAGGCGAAAGTCAAAATAGAAT

Function

NR:

description
hypothetical protein EH28_06569

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU500257 False 1354 lncRNA 0.34 1 77269860 77271213
TU500255 False 1703 lncRNA 0.34 1 77269947 77271649
TU500258 False 1066 lncRNA 0.36 1 77269947 77271012
TU500256 True 1261 lncRNA 0.41 1 77271489 77272749

Neighbor

gene id symbol gene type direction distance location
LOC110524597 LOC106560308 coding downstream 53949 77181914 ~ 77215911 (-)
LOC110524596 barhl2 coding downstream 273584 76991991 ~ 76996276 (-)
glrx2 glrx2 coding downstream 680880 76587005 ~ 76588980 (-)
LOC110524587 uchl5 coding downstream 683182 76578243 ~ 76586678 (-)
LOC110524583 LOC106560299 coding downstream 944992 76288921 ~ 76324868 (-)
LOC110524600 tgfbr3 coding upstream 4156 77276905 ~ 77402910 (-)
LOC110524605 LOC106560313 coding upstream 242369 77515118 ~ 77527861 (-)
LOC110524607 LOC106560317 coding upstream 276111 77548860 ~ 77556868 (-)
LOC110524608 evi5 coding upstream 285573 77558322 ~ 77617711 (-)
LOC110524609 fam69a coding upstream 354708 77627457 ~ 77642149 (-)
G442013 NA non-coding downstream 13884 77255726 ~ 77255976 (-)
G442012 NA non-coding downstream 14328 77255183 ~ 77255532 (-)
G441895 NA non-coding downstream 21362 77248270 ~ 77248498 (-)
G441828 NA non-coding downstream 94971 77174511 ~ 77174889 (-)
G441790 NA non-coding downstream 100050 77169450 ~ 77169810 (-)
G442022 NA non-coding upstream 219 77272968 ~ 77273997 (-)
G442023 NA non-coding upstream 3096 77275845 ~ 77276048 (-)
G442030 NA non-coding upstream 15815 77288564 ~ 77288787 (-)
G442032 NA non-coding upstream 18494 77291243 ~ 77291489 (-)
G442034 NA non-coding upstream 20458 77293207 ~ 77293417 (-)
G441630 NA other downstream 248485 77013999 ~ 77021375 (-)
G441483 NA other downstream 367089 76902382 ~ 76902771 (-)
G441168 glrx2 other downstream 679490 76586458 ~ 76590370 (-)
G439788 LOC106560295 other downstream 1694291 75571249 ~ 75575569 (-)
G439594 NA other downstream 2004457 75263473 ~ 75265403 (-)
G442115 NA other upstream 133993 77406742 ~ 77407135 (-)
G442381 rpl5 other upstream 350550 77623299 ~ 77627214 (-)
G442807 NA other upstream 808996 78081745 ~ 78082010 (-)
G444001 NA other upstream 1691882 78964631 ~ 78966029 (-)
LOC110524635 LOC106560345 other upstream 1950391 79219153 ~ 79237461 (-)

Expression


Co-expression Network