XLOC_023563


Basic Information

Item Value
gene id XLOC_023563
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 31455086 ~ 31458194 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046876
GAGATATTTTGTACAAGACTTTTTACATATAATCATCCAACAAGTCAACAGCATATCCTCAAATAATCAAACAtcaatataactttttaaatccAGGTTATCTAACAATATTACACATTTATGTCTCTATTCTCGGTTTTAAAAAGGGGTAAATGTGCAGAATAAATAGACTGAAGGCCTGTAAAATCAAGGACGTGctcttttctttctcttcttCTAGCTTGCCTTGTCTGTTCCCCGTGAAACCACAACAGTAAATCCCCTCAGCCGAACTAAAAGCTTATAAGGTTTAATTAAGTAAGTGGTCCACGGCTCCATATGAGCCAAACTAATCCAGCAGAACAGCTCACAGGTCCACCAGTCAAATCTGCTCAAACCTCAATGACAATTTTCTGATATTCTCTGAACTGCATGAAGTTACACAGCAGATAAATATGTAAACATACAGTGAAAAAAGCTATacatatattaatgttttgtatTGATTACACAATAAGCACTTGTATTGttttgcgtatgtgtgtgtgtgtgtgtctgtcattgTTCATGACTTTTTTATATTTGATAACTTTATGTAATGTATATCATAAAGCGATGAAATATGAAATGGCATTGTGGGCGTGTTTTCAGGCTTGCTCTGCAGATGATGGACAGCGTAATGAATTGTAGCCTCACTTCACTTCTGAGGTCTGTTTGCAGATGGTATTAGTGGTCTAAATGTGCTAATTGCATCAGGCAGTAACATTGGGAGCAGTGGAGCCGCGGTCAGATGAGAAGGATAAACACAGCAGAGATCTGCTCAGACACTGCCTGACACTCGGGGATGTTCAGCAAACTCAAGAAGATCATTGGGGGTCCGACTGTGGGTCCCACCCCGGCTCCAGCACCTGCTCCGGCCCCTGCACCCGCTCCTGCTCCAGCTCCTGCACCTGCCAAGGAAGAAAAACCTGCAGACAAGGAAAATGAAGACAAGAAAGATGATAAAGGCCCTGGTAAGTCATCTGTTATCGTTGTAATTGTCCTCTAAATTATCTCATCATTCATGGTATAAGCACCTGCAGAA
>TCONS_00047218
CCTCAATGACAATTTTCTGATATTCTCTGAACTGCATGAAGTTACACAGCAGATAAATATATGGTATTAGTGGTCTAAATGTGCTAATTGCATCAGGCAGTAACATTGGGAGCAGTGGAGCCGCGGTCAGATGAGAAGGATAAACACAGCAGAGATCTGCTCAGACACTGCCTGACACTCGGGGATGTTCAGCAAACTCAAGAAGATCATTGGGGGTCCGACTGTGGGTCCCACCCCGGCTCCAGCACCTGCTCCGGCCCCTGCACCCGCTCCTGCTCCAGCTCCTGCACCTGCCAAGGTAGATACTATTGGCTTTATCGACACATTTTTGgtgtttttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacatacatacatacatacatacatacatacatacatacatacatacatacatacatacatacataca
>TCONS_00047219
GTCAAATCTGCTCAAACCTCAATGACAATTTTCTGATATTCTCTGAACTGCATGAAGTTACACAGCAGATAAATATGCAGTAACATTGGGAGCAGTGGAGCCGCGGTCAGATGAGAAGGATAAACACAGCAGAGATCTGCTCAGACACTGCCTGACACTCGGGGATGTTCAGCAAACTCAAGAAGATCATTGGGGGTCCGACTGTGGGTCCCACCCCGGCTCCAGCACCTGCTCCGGCCCCTGCACCCGCTCCTGCTCCAGCTCCTGCACCTGCCAAGGTAGATACTATTGGCTTTATCGACACATTTTTGgtgtttttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacatacatacatacatacatacatacatacatacatacatacatacatacatacatacatacataca
>TCONS_00047220
GGTCCACCAGTCAAATCTGCTCAAACCTCAATGACAATTTTCTGATATTCTCTGAACTGCATGAAGTTACACAGCAGATAAATATGTAAACATACAGTGAAAAAAGCTATacatatattaatgttttgtatTGATTACACAATAAGCACTTGTATTGttttgcgtatgtgtgtgtgtgtgtgtctgtcattgTTCATGACTTTTTTATATTTGATAACTTTATGTAATGTATATCATAAAGCGATGAAATATGAAATGGCATTGTGGGCGTGTTTTCAGGCTTGCTCTGCAGATGATGGACAGCGTAATGAATTGTAGCCTCACTTCACTTCTGAGGTCTGTTTGCAGATGGTATTAGTGGTCTAAATGTGCTAATTGCATCAGGCAGTAACATTGGGAGCAGTGGAGCCGCGGTCAGATGAGAAGGATAAACACAGCAGAGATCTGCTCAGACACTGCCTGACACTCGGGGATGTTCAGCAAACTCAAGAAGATCATTGGGGGTCCGACTGTGGGTCCCACCCCGGCTCCAGCACCTGCTCCGGCCCCTGCACCCGCTCCTGCTCCAGCTCCTGCACCTGCCAAGGTAGATACTATTGGCTTTATCGACACATTTTTGgtgtttttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacatacatacatacatacatacatacatacatacatacatacatacatacatacatacatacataca

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046876 False 1063 lncRNA 0.41 2 31455086 31458194
TCONS_00047218 False 468 lncRNA 0.46 2 31457088 31457818
TCONS_00047219 False 448 lncRNA 0.46 2 31457088 31457834
TCONS_00047220 True 756 lncRNA 0.42 1 31457088 31457843

Neighbor

gene id symbol gene type direction distance location
XLOC_023562 cngb3.2 coding downstream 2163 31430890 ~ 31452923 (-)
XLOC_023561 cngb3.1 coding downstream 29287 31402894 ~ 31425799 (-)
XLOC_023560 abcd3a coding downstream 122999 31310640 ~ 31332087 (-)
XLOC_023559 acp5b coding downstream 148362 31294019 ~ 31306724 (-)
XLOC_023558 alg14 coding downstream 231854 31201195 ~ 31223232 (-)
XLOC_023564 CABZ01029420.1 coding upstream 182118 31640312 ~ 31640427 (-)
XLOC_023565 NA coding upstream 251307 31709501 ~ 31717481 (-)
XLOC_023566 NA coding upstream 297053 31755247 ~ 31756351 (-)
XLOC_023567 CT737162.3 coding upstream 328269 31786463 ~ 31786577 (-)
XLOC_023568 steap2 coding upstream 374264 31832458 ~ 31846366 (-)
XLOC_023665 dre-mir-735 misc upstream 6719767 38177961 ~ 38178027 (-)
XLOC_023554 NA non-coding downstream 373653 31040020 ~ 31081433 (-)
XLOC_023553 NA non-coding downstream 482223 30927688 ~ 30972863 (-)
XLOC_023552 NA non-coding downstream 543221 30903443 ~ 30911865 (-)
XLOC_023550 NA non-coding downstream 1078868 30329467 ~ 30376218 (-)
XLOC_023545 NA non-coding downstream 1532266 29921076 ~ 29922820 (-)
XLOC_023574 NA non-coding upstream 904239 32362433 ~ 32363362 (-)

Expression


Co-expression Network