G442273


Basic Information

Item Value
gene id G442273
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77558330 ~ 77583227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU500530
AAATAGTTTATTTGTGAACTCAAACACATTCATTTCACATACATGTTTTCAGAGTGTGGTAATGATTATTCCATAGTGTTATTACTCCATGTAGACTTCTCTTTACTGCATTATATTGTCTTTCTCTGAAAGTGCCAAAACTGCGTCATGATGCCTTTCCAAATATTCCATCCATCGTTGTCCTCAACCAACTAAGGAATAGCAAGCACATCAGTATCACAAAACCTCTTCTGAACAATGAGTCCGTGCGTTCTGGATATAAATATTTTGCCGAGACTTGGCTGATAGGTTTTTGGTTCTAATGTCTTAAAGGGCCACTGCTTTAAAAACGTTTAAAAATCTAGCAATTATGAGATGTCCATTGTTGTGGGCCTCATTTCCAAGTTGCGATGTAATTTAAGCATTACGATGATTGTACCGAATGCATCGTTATTTACAAGCCAACTTTAAGTGTTCCCCAAACAAGCACGTAAAGAGACCATGTGTCGAGACTGATAGGATAGAAAGAAAAACAGCGctcggatcagctttctccattcaaatcttattTTAACATAATTATGCCACAATACTGATGAGAGATCACCACCTATGGCGATTGAAGGCGACACGGTTTATTATGCTTATAATAATGCACGAAATCACAGATTGGGCATATCATTACACACGTTGTCACAGAGGCAAACATTTCAAATTGTAGCCTAGTCGCAAACTAGAACTCAACTGATTGAACATGAAATTGATTTCAATAAGATTAAAATAGCCTAATTATAGGCTCTGTTGTCCATGTAATAATATGTGTAATAATATCGGTTTTAATTTGTTTGCAACAATTAGAAATACtttggcaactttgtatttgtagtcaactaaCGTCCTTCTGAAGTTATCGGCAGTTACAATCAGACCAATAGAATCATGATGTTTAGGAGATTTTTAGCGGAGATCTGTGAATAAAGTGACGCGGAAGGGCAAAAATACATCTAACGATGCACTTTGACTGCTCTACGAGTAGTCTGGATCACTCGTAGATGTGCAAAGGTTTTTAAGAGCCACGTTACTAACGCAGGCTCAGGGAAACACCGTGGCTATTAAATATACATAGTAATAAGGTTGTAAGGATTATCTTAATGCTACGAAGGCTCTGGGGTAAAAGGCGCAGGTCCTGTCAACCTAGAGAAGTTGTCTGTTTTAGGGTTCTGCTAACCCTGATAATGGATCAACATCAACCTTTATGAAACCAAGTGGTGCATATTTATCTGGCAGGCAGAGCCTACTGTTTAAAATGCCATCATTGTCCCAGATCTGTCATGCCAAGGCATCACAATGACCATACGAGTTATAGGCTatacagcacaaactgatctgagaCCAGCTTATACAACCCCTCCTACAGTTTGGTAACACTTGACAATACACTTTGCTTCATTCACAGAGGAAACAAACAGCACATTTCTTATGATGCATGCCAAATGGCAAGCTATACATAGCTATACatagtgcactacttttgaccaaaggcTATGCAACATATAGGGCAatatccaaaattaaatctagaatcggcttcctatttcgcaacaaagcctccttcacttatgccgccaaacatacttcggcaatgtcatttacaaaatggcctccaacactctactcaacaaatttgatgcagtctatcacagtgccatccgttttgtcaccaaagccccatatactacccaccactgcgacctgtacgctctcgttggctggccctcgcttcatactcatcaccaaacccactggctccaggtcatccacaagtctctgctaggtaaagccccacctcatctcagctcactggtcaccatagcagcacccacccgtagcacgcgctccagcaggtatatctcactggtcacccccaaagccaatttttcctttggccgcctctccttccagttctccgctgccaatgactggaacgaactgcaaaaatcactaaagctggagactcatatctccctcactagctttaagcaccagctgtcagagcagctcacagatcactgcacctgtacatagcccatccaactacctcatccccatactgtatttatcttgctcctttgcatcccagtatctctacttgcacattcatcatctgcacattctaccattccagtgtttaattgctatattgtaattacttcgccaccatggcctatttattgccttacctcccttatcctacctcatttgcacatgctgtatatatacactttttctactgtattattgattgtatgtttgtttattccatgtgtaactctgtgtttttgtacgtgtcaaactgctttgctttatcttggccaggttgcagttgcaaatgagaacttgttctcaactagcctacttggttaaataaaggtgaaataaaaaataaatcactgctccagagtccaatggcagtgcaCTTAAcaacactccagccgacgcttggcattgcgcatggtgatcttaggcttgtgtgcgaccgctcggccatggaaaaccatttcatgaagctcccaaacaaacagttattttgctgacattgcttccagaggcagctaGGAActcgtgagtgttgcaaccgagaccAGACGAttgttctgtaagcttgtgtatCTCTACCACCTCACGGCTGTGTCGTTGTTGATCCttggctgggccaattgtgcaccgccataTGGGACTCCAGGTCATGGCCGGTTCTGACACTGCCTGGGaacgaacccgggtctgtagtgacgactctagaccgctgcgccacacgGGAGGCTGAAACAGCTTTTCTTGAACAATTCTGCCACTGGCTAATGAGAAAAATAAAATTAGCAGCTCTAACGCAATATTGTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU500530 True 2880 TUCP 0.42 3 77558330 77583227

Neighbor

gene id symbol gene type direction distance location
LOC110524606 cssa10h1orf146 coding upstream 43210 77512724 ~ 77515120 (+)
LOC110524603 LOC106560312 coding upstream 45910 77499141 ~ 77512420 (+)
LOC110524602 ephx4 coding upstream 102714 77443981 ~ 77455616 (+)
brdt brdt coding upstream 116698 77425676 ~ 77441632 (+)
LOC118964533 NA coding upstream 837198 76716999 ~ 76721132 (+)
LOC110524610 LOC106584167 coding downstream 39057 77622284 ~ 77627211 (+)
LOC110523008 ccdc18 coding downstream 59435 77642662 ~ 77685275 (+)
scinla LOC106560322 coding downstream 108947 77692174 ~ 77705543 (+)
zgc:109982 rdh8 coding downstream 129401 77712628 ~ 77717161 (+)
dr1 dr1 coding downstream 134163 77717390 ~ 77720933 (+)
G442265 NA non-coding upstream 6299 77551701 ~ 77552031 (+)
G442264 NA non-coding upstream 6775 77550864 ~ 77551555 (+)
G442259 NA non-coding upstream 15241 77542857 ~ 77543089 (+)
G442247 NA non-coding upstream 27224 77530851 ~ 77531106 (+)
G442244 NA non-coding upstream 28783 77528485 ~ 77529547 (+)
G442350 NA non-coding downstream 97833 77681060 ~ 77681570 (+)
G442351 NA non-coding downstream 98586 77681813 ~ 77682234 (+)
G442353 NA non-coding downstream 104096 77687323 ~ 77687625 (+)
G442354 NA non-coding downstream 104771 77687998 ~ 77688317 (+)
G441903 NA other upstream 289564 77268212 ~ 77268766 (+)
LOC110524571 LOC106560285 other upstream 2380043 75161317 ~ 75178287 (+)
G438719 NA other upstream 2781861 74772009 ~ 74776469 (+)
LOC110524560 LOC106560270 other upstream 2788164 74729349 ~ 74770168 (+)
G437327 NA other upstream 4063246 73456301 ~ 73495084 (+)
LOC110524622 LOC106560333 other downstream 662612 78245839 ~ 78288092 (+)
G445204 NA other downstream 2633251 80216478 ~ 80217090 (+)
G445211 NA other downstream 2651653 80234880 ~ 80235428 (+)
G446381 NA other downstream 4312577 81895804 ~ 81897781 (+)
G447001 NA other downstream 4840971 82424198 ~ 82442223 (+)

Expression


Co-expression Network