G442620


Basic Information

Item Value
gene id G442620
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77758822 ~ 77833545 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU500946
agagaccagaccctgctctaaacaggtacagagacgaggggggagagaccaggccctgctctaaacaagtacagagacgaggagagagagaccaggccctgctctaaacagctacagagacgaggagagagaccaggccctgctctaaacaggtacagagacaaggagagagagaccagaccctgctctaaacaggtacagagacgaggagagagagaccagaccctgctctaaacaggtacagagacgaggggggagagaccaggccctgctctaaacaggtacagagacgaggagatgTCTAATTGCTGTGCCAAATACACATCAAATTATCCTATAAACATGTTCTGAATAACCTTGCAGAAGAAGTACTCTATGACCAAGATTACACTGACCACTGATGCTTTTCTTCCTTAGCAGCAGCCCAAGTCAACCTACTCTTTATTCTTGTGCTTTTCTGTTTGCTGGCATGTTCCTCCAGCATTGACGTGCATAAGCTCACCACATAGTGATGCAGCTGAAGAGGATGGGTTTTCCTGGTATCGGTCTCAAACTCCACCGGGAGTACAAGGAAGTATTCATTCAAGTTATGAGATCTCAGGGAGAGCGTATGTGAGGGGTAGTGTTGGGatacgtcccaaatagcaccatattccctatatacggcactacttttgatcagagtccTACGGCACTCTATTCTCTACggccctggttaaatgtagtgcactaaataggcaatagggtgccatttgggacgaataTACAGTAAAACACTAATTGAACACAGTATCTGCTTCTGCAACACTCTGTTGCACCACCCAGATTCAACCCCTAATGAACTTTTATCAAAAACTGCAAAGCTGCAAACCACCAACTCCGCAATGCTGGGAGATGGATGCAATTAAATGTAACTTATACCTGGATTGCCAAATCTGGTCTGGTAGGATCTAACAGTTGATATCAGTCACAGAGTTG
>TU500956
agacgaggagagagagaccaggccctgctctaaacaggtacagagacgaggagagagagaccaggccctgctctaaacaggtacagagacgaggggggagagaccaggccctgctctaaacaggtacagagacgaggggggatagaccagaccctgctctaaacaggtacagagacgaggagagagagaccaggccctgctctaaacaggtacagagaccaggagagaGAGaacaggccctgctctaaacaggtacagagacgaggagagagagaccagaccctgctctaaacaggtacagagacgaggggggagagaccaggccctgctctaaacaggtacagagacgaggagagagagaccagaccctgctctaaacaggtacagagacgaggggggagagaccaggccctgctctaaacaggtacagagacgaggagatgTCTAATTGCTGTGCCAAATACACATCAAATTATCCTATAAACATGTTCTGAATAACCTTGCAGAAGAAGTACTCTATGACCAAGATTACACTGACCACTGATGCTTTTCTTCCTTAGCAGCAGCCCAAGTCAACCTACTCTTTATTCTTGTGCTTTTCTGTTTGCTGGCATGTTCCTCCAGCATTGACGTGCATAAGCTCACCACATAGTGATGCAGCTGAAGAGGATGGGTTTTCCTGGTATCGGTCTCAAACTCCACCGGGAGTACAAGGAAGTATTCATTCAAGTTATGAGATCTCAGGGAGAGCGTATGTGAGGGGTAGTGTTGGGatacgtcccaaatagcaccatattccctatatacggcactacttttgatcagagtccTACGGCACTCTATTCTCTACggccctggttaaatgtagtgcactaaataggcaatagggtgccatttgggacgaataTACAGTAAAACACTAATTGAACACAGTATCTGCTTCTGCAACACTCTGTTGCACCACCCAGATTCAACCCCTAATGAACTTTTATCAAAAACTGCAAAGCTGCAAACCACCAACTCCGCAATGCTGGGAGATGGATGCAATTAAATGTAACTTATACCTGGATTGCCAAATCTGGTCTGGTAGGATCTAACAGTTGATATCAGTCACAGAGTTG
>TU500957
agagagacgaggagagagagaccagaccctgctctaaacaggtacagagacgaggagagagagacggggagggagagaccaggccctgctctaaacaggaacagagacgaggagagagagaccagcccctgctctaaacaggtacaaagacgaggagagagagaccagggcctgctctaaacaggtacagagaccaggagagagagaccaggccctgctctaaacaagtacagagacgaggagagagagaccaggccctgctctaaacagctacagagacgaggagagagaccaggccctgctctaaacaggtacagagacaaggagagagagaccagaccctgctctaaacaggtacagagacgaggagagagagaccagaccctgctctaaacaggtacagagacgaggggggagagaccaggccctgctctaaacaggtacagagacgaggagatgTCTAATTGCTGTGCCAAATACACATCAAATTATCCTATAAACATGTTCTGAATAACCTTGCAGAAGAAGTACTCTATGACCAAGATTACACTGACCACTGATGCTTTTCTTCCTTAGCAGCAGCCCAAGTCAACCTACTCTTTATTCTTGTGCTTTTCTGTTTGCTGGCATGTTCCTCCAGCATTGACGTGCATAAGCTCACCACATAGTGATGCAGCTGAAGAGGATGGGTTTTCCTGGTATCGGTCTCAAACTCCACCGGGAGTACAAGGAAGTATTCATTCAAGTTATGAGATCTCAGGGAGAGCGTATGTGAGGGGTAGTGTTGGGatacgtcccaaatagcaccatattccctatatacggcactacttttgatcagagtccTACGGCACTCTATTCTCTACggccctggttaaatgtagtgcactaaataggcaatagggtgccatttgggacgaataTACAGTAAAACACTAATTGAACACAGTATCTGCTTCTGCAACACTCTGTTGCACCACCCAGATTCAACCCCTAATGAACTTTTATCAAAAACTGCAAAGCTGCAAACCACCAACTCCGCAATGCTGGGAGATGGATGCAATTAAATGTAACTTATACCTGGATTGCCAAATCTGGTCTGGTAGGATCTAACAGTTGATATCAGTCACAGAGTTG
>TU500933
gagagaccaggccctgctctaaacaggtacagagacgaggagagagagaccagaccctgctctaaacaggtacagagacgaggagagagagaccagaccctgctctaaacaggtacagagacggggggggagagaccaggccttgctctaaacaggtacagagacgaggagagagaccagaccctgctctaaacaggtacagagacgaggagagagaccaggccctgctctaaacaggtacagagacgaggagagagagaccaggccctgctctaaacaggtacagagacgaggagaga
>TU500959
ccctgctctaaacaggtacaaagacgaggagagagagaccaggccctgctctaaacaggtacagagacgaggagcgagagaccaggccctgctctaaacaggtacagagacgaggagagagagaacagaccctgctctaaacaggtacaaagacgaggagagagagaccaggccctgctctaaacaggtacagagacgaggagagagagaccagaccctgctctaaacaggtacagagacgaggagagag
>TU500971
gagagagagaccagaccctgctctaaacaggtacaaagacgaggagagagagaccaggccctactctaaacaggtacagagacgaggagagagagaccaggccctgctctaaacaggtacagagacgaggagagagaccagaccctgctctaaacaggtacagagacgaggcgagagaccagaccctgctctaaacaggtacagagacgaggagagagagaaacagaccctgctctaaacaggtacaaagacgaggagagagagaccaggccctgctctaaacaggtacagagacgaggagagagagaccagaccctgctctaaacaggtacagagacgaggagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU500946 False 978 lncRNA 0.47 5 77758822 77770434
TU500956 False 1121 lncRNA 0.48 4 77758822 77767546
TU500957 False 1137 lncRNA 0.48 7 77758822 77833545
TU500933 False 299 lncRNA 0.56 2 77779636 77829079
TU500959 False 250 lncRNA 0.54 2 77828733 77829826
TU500971 True 348 lncRNA 0.53 2 77828733 77830181

Neighbor

gene id symbol gene type direction distance location
LOC110524609 fam69a coding downstream 116673 77627457 ~ 77642149 (-)
LOC110524608 evi5 coding downstream 141111 77558322 ~ 77617711 (-)
LOC110524607 LOC106560317 coding downstream 201954 77548860 ~ 77556868 (-)
LOC110524605 LOC106560313 coding downstream 230961 77515118 ~ 77527861 (-)
LOC110524600 tgfbr3 coding downstream 355912 77276905 ~ 77402910 (-)
gadd45ab LOC106560326 coding upstream 38220 77871765 ~ 77874843 (-)
znf648 LOC106560330 coding upstream 91670 77914925 ~ 77939001 (-)
glulb LOC106560331 coding upstream 150199 77983744 ~ 77987655 (-)
LOC110524621 med8 coding upstream 406223 78239768 ~ 78245830 (-)
hyi hyi coding upstream 549460 78383005 ~ 78387067 (-)
G442488 NA non-coding downstream 26426 77731824 ~ 77732396 (-)
G442475 NA non-coding downstream 51564 77707000 ~ 77707258 (-)
G442461 NA non-coding downstream 66924 77691670 ~ 77691898 (-)
G442458 NA non-coding downstream 71136 77687385 ~ 77687686 (-)
G442381 rpl5 non-coding downstream 131608 77623299 ~ 77627214 (-)
G442643 NA non-coding upstream 33743 77867288 ~ 77868657 (-)
G442644 NA non-coding upstream 36823 77870368 ~ 77871055 (-)
G442649 NA non-coding upstream 47680 77881225 ~ 77881951 (-)
G442666 NA non-coding upstream 68237 77901782 ~ 77902328 (-)
G442664 NA non-coding upstream 69571 77903116 ~ 77908865 (-)
G442115 NA other downstream 351687 77406742 ~ 77407135 (-)
G441630 NA other downstream 737447 77013999 ~ 77021375 (-)
G441483 NA other downstream 856051 76902382 ~ 76902771 (-)
G441168 glrx2 other downstream 1168452 76586458 ~ 76590370 (-)
G442807 NA other upstream 248200 78081745 ~ 78082010 (-)
G444001 NA other upstream 1131086 78964631 ~ 78966029 (-)
LOC110524635 LOC106560345 other upstream 1389595 79219153 ~ 79237461 (-)
G444691 LOC106605670 other upstream 1897442 79730987 ~ 79731536 (-)
G445115 NA other upstream 2148916 79982461 ~ 79987704 (-)

Expression


Co-expression Network