G442643


Basic Information

Item Value
gene id G442643
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77867288 ~ 77868657 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU500995
ATTGTAATCACTTGAAATAGGAAATATATCCACAAAGACAGTACATACTAGAGACCAAAGTAGCATCCAGTATGTGTCACAGAGAAAAATAAACAAGTTTTTCTTTAAAACTGTAAAATCCATTTGCAACATGAATTATTAAGTTGGCAAAAATCAATGCAACACATGCATCAAAATAGCATTGGCCTTTCATTGTAAATGTATATGCAGTGACTTAACAGCGAGAAGAAGCAAGTGCAGAAACACATCATACAGGAACACACAACTTTAAGCGAGCTTTCAAAGCCACACCGAATAtaatctcttgtggacagacTACTTAATGTAAATAGTATTTGACATGAGATTTTCAATTGTAGGTTGCCAAGATTACACAGAATATGGAGGCAAATAGCCTACTATGAGGGGACGTTTCAGTTGGTGCTGCCATCTGTCTCTATATATAGCAGTCTATAGTAATTATAGGCTTTAACCCACTGGTATAAGAGCAACTTATTGTATTGCCAATAATGATACTGACAGACAAGCACTTCAAAGATGTGCTCCATTCATCCACTGCGGATGTATTGATTCAGTTATTCACAGTATTAGTATAGTGTTGTTTGAAGAGTGTGGCTAAAAAGTAGTGGTGAAATGTCGAAACGAGACTACTTTAATACTAAGGCCCTGGCTGGTTaagctgggtcatgttcatttggTAGAAAACGAAGCGAACCAGGTAtgtactacctgaacttgtctaATTGTTTTAGTTTTCGGTTTTGCTATTGTccgccctaatgaacacgaccatgGTCTCCGAGTTGCCTGTGACAGTCACGTGCacagacaaaaaaaatacattctcCCAAACACACAATAACAATTATTATTCAACGCATGACCATTCAGAGAGTTGAAAAGAAGACAATGGAGCAGCTATTGTAAACAAGGAATGTTCACACTCAAGAAGAGATCATAATAACAGTTGTCACAAATTTCACGATGGATCACAGAATCCCTGTCAGAATAGAAGTCATACATCTATCAATAAAAAGTTATTACAGTGAATCACTTTAAAAGCACTGGCAATAAAATACAAATCAGAAAACCTTTACATTTCTAGCCTGGTACCAGATATGTCTGTGCTCTTGCTTACTCCATTGATGTCCTTGTCAAGACAGTTTTTATCTTTGTTTGCCACTACAATGTGTTAAGGAGTTGGCACGATAGCACAAACAGATTAGCACCCAGTTTCCTCTGGTGCTGGTACAGATGTAGCGTCTTAATAACAGTttttcacagcaggaaaataatcctgtagcaacaggaaatgtgaatcattatgtggattatagttaatggacatttttgataCATTTTTAGTTAGG

Function

NR:

description
nucleotide-binding oligomerization domain-containing protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU500995 True 1370 lncRNA 0.37 1 77867288 77868657

Neighbor

gene id symbol gene type direction distance location
LOC110524609 fam69a coding downstream 225139 77627457 ~ 77642149 (-)
LOC110524608 evi5 coding downstream 249577 77558322 ~ 77617711 (-)
LOC110524607 LOC106560317 coding downstream 310420 77548860 ~ 77556868 (-)
LOC110524605 LOC106560313 coding downstream 339427 77515118 ~ 77527861 (-)
LOC110524600 tgfbr3 coding downstream 464378 77276905 ~ 77402910 (-)
gadd45ab LOC106560326 coding upstream 3108 77871765 ~ 77874843 (-)
znf648 LOC106560330 coding upstream 56558 77914925 ~ 77939001 (-)
glulb LOC106560331 coding upstream 115087 77983744 ~ 77987655 (-)
LOC110524621 med8 coding upstream 371111 78239768 ~ 78245830 (-)
hyi hyi coding upstream 514348 78383005 ~ 78387067 (-)
G442620 NA non-coding downstream 33743 77758822 ~ 77833545 (-)
G442488 NA non-coding downstream 134892 77731824 ~ 77732396 (-)
G442475 NA non-coding downstream 160030 77707000 ~ 77707258 (-)
G442461 NA non-coding downstream 175390 77691670 ~ 77691898 (-)
G442458 NA non-coding downstream 179602 77687385 ~ 77687686 (-)
G442644 NA non-coding upstream 1711 77870368 ~ 77871055 (-)
G442649 NA non-coding upstream 12568 77881225 ~ 77881951 (-)
G442666 NA non-coding upstream 33125 77901782 ~ 77902328 (-)
G442664 NA non-coding upstream 34459 77903116 ~ 77908865 (-)
G442381 rpl5 other downstream 240074 77623299 ~ 77627214 (-)
G442115 NA other downstream 460153 77406742 ~ 77407135 (-)
G441630 NA other downstream 845913 77013999 ~ 77021375 (-)
G441483 NA other downstream 964517 76902382 ~ 76902771 (-)
G441168 glrx2 other downstream 1276918 76586458 ~ 76590370 (-)
G442807 NA other upstream 213088 78081745 ~ 78082010 (-)
G444001 NA other upstream 1095974 78964631 ~ 78966029 (-)
LOC110524635 LOC106560345 other upstream 1354483 79219153 ~ 79237461 (-)
G444691 LOC106605670 other upstream 1862330 79730987 ~ 79731536 (-)
G445115 NA other upstream 2113804 79982461 ~ 79987704 (-)

Expression


Co-expression Network