G442664


Basic Information

Item Value
gene id G442664
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77903116 ~ 77908865 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU501019
TTAATTGTTGGCGTTTGTTTATTTCAATTGTTACTTGTACATTATTTCACCCTACAAGACCTTTAGAATTACCAGCACCGTTGGCATCTTATTTGTTTATCCATGAAATACTCCCACGTGACATCAGAGGATTGCATTTAGTCAGTGTCCCCCCCTTTAAAACGTGGAGACAACACTACATCATCCAGCACATGTAGGCCACTTTATATCAGTTTATTTAAAAAGTCACGTTTTGTCACGCCTTCTTTAGGGTGACGCGAAACAACACAATCAGGAATGAGGGATAGTTTTCACTGTCGAGATGTGGTCCAGACCGGTGACTTGGCAGGGAATCTTACTAGCAGCTGTCTTTCCTATCTCTAGTGCTGAGAATAGTGACCCAGTGTCCAGCCAACGTGTCCTGGAATCCATTACACTGGTAGCCTCAGTAGCATTGCACGAGCCTTGGTTTGTGTGGGCCGAAACAGCTCATAGGAGCAGgtccctgtctcctgtttctgtagcgtgaggcagcttgatgtgcacaaaacattaggaacacctgctctttccatgacatagctttcacctggtcagttaaatacacttcaatgagtgtagatgaaggggaggagacaagttaaccctttactgcagtgggctagttcaaatctactttgaaacaaagtcacctcacacacatggcttAAAAAAagaggacacctgtaccatgtcagatatagagttgaaatgtattcaatgttGAGTTTGCACATCACAAAAGACTGAAATATAGCAAAACTGTTTTTTTATATATCATGTTTATTGATGCTTAAATTATGAAAAATTTGAACAACATTCCACCAATGAGGTCATTAGACggcgatttggtcatttgactgcaggaaagggctacggatttttaagcattgagacaattgagacatggattgcgtatAATGTGCCATTCtgaggttgaatgggcaagacaaaatatttaagtgcctttgaacagggtatggtagaaggtgccaggcgcaccggtttgcgCACCGTTTTGAGTGTGTTacaaactgcaacgctgctgggtttttcacgctcaacagtttctcgtgtgcatcaagaatggtcccccacccaaaggacatccagccagcttgacacaactgtgggaagcattggagtcaacatgggacagcatccgtgtggaacgctttcaacaacttgcagagtccatgccccaatgaattgagtctgttctgagggggggtgtgcaactcaatattaggaaggtgttcctaatgttttgtacaatcagtgtatagtgcactactaaagTAGCACTGAAGTAGAAAAATGGGAATAGTGTTCATTTTGGACACATCCTGATGCTGCCAGTGTAACGGGTGGGGGCCTGAACACGTTGGCTGGACACTGGGTCACTATTCCCAGCCCTAGAGCCAGGAGTGTTGACTAATGGTAAAAGGAGATGGGACCAGGCATAATTGGAAAAATTCTTCACTCCTGCTTAAAAGGAGTCTATGATTTAAATTATGGATGGGCTATTCCCATGTAAATTAAAATTTTCACAAGATTCAGTTTCACTGGGCCTTAACTGCAATATATTTCTGTAAAACACAGTGGTAAATAATTGTCTATCATAAATAGATATAGTAACATGATTTAATAACACATAAGTATATCAAACCAAAGTTAATTAAAACACTTGTCAattaattgtcacgccctgaccttagagatcctttttatgtctctatttggtttggtcagggtgtgatttgggttgggtattctattatttgtatttctatgtttggccgggtagggttctcaatcagagacagctgtctatcgttgtctctgattgagaaccatacttaggtagcccttttcccacctgtctttgtgggaagttgactttatggcacatagcctttagcatcacggtttgttttgtagtgtttattgttctGCGTCTtttctaaataaaataatatgtacactcaccacgctgcaccttggtgcaGTTCTTTCAACGGCCGTGACATTAATATTTATTGTAAAACATAACCAAGAGATTTAATGAATGAGTTTCTGTATTAAGCAAACCATATACAAATTACGATGGCCATAATATATAATACATGCTTTCACATTGGTTTCTGGGCCTATACTTGtctgattaaattaaataaatattgatCATTTGCTTACATTTACAAATACAATGACAAAGCATTGTTCTCTGAGagaaataaaatgaaaataatCATACATATTGTATATCTTCTATTGATAGGCTAGTTTAGATGACCTCTATAGAATAATATCCTGTTAATGGTACCTGTTTTGTAGGCCATGTGGTCAGGGCCAGACTGTTCCACATGGGTATGTGTATCTGTGTCACAGAATACAGTTTATAGTGTGTGACTTTCTTcatttttatatacagtaccagtccaaagtttggacacacctacttattccagggcttttctttatttgtactattttctacatcgtagaataatagtgaaaacatcaaaactatgaagtaacacatatggaatcatgtagtaaccaaaaaagtgttaaacaaatccaaatatattttagatttcagattctccatacttttgactggtactgtagtttattctccgttagtcagcaccttTACAAATATTTTGGGGTGTGTCAGCTCATGCTTTTTATCGAATACAGTTTCCCCTCAAACCTAACATGTGCCATACTGTCTCAGAGCCAGATTTATATTTTGGCTGATATTGTGGCACATATCCCTAAGGAAAAGTTTGCCCTTGTGGTCCTGGTTGTTTGGCCTCATTATACAGGCTCCAGTTGATCAATAGGGTTTGGATGGTGTCCTGATTGAGGTACAGTATATCCCAACCCTGTACTACTCCCACGACTATGCACCATCCAATGTCACCAAAGGGAAATCTTCCCTGACGACACGTCACCACGTCTGACGTAACCAGAACGTTTCTCAGGGGGGCCTTGACCTATGCCCTAGTGTGAGTTATAAACAAACTCATTAAAAACGTTCagtcctacacacaatacctagaGTATCTATCCTGAAACCAGGATTACAACAGACATGtaaaataacagaactgatgCTGAGGTAAAGCTGAGGTGGCTGTTATTACACATCACAggctctttctctttcactctcaatTTTTTTCCTATAAACTCTGTCCTCTCCTCAACTCCATTGCACAAATCTGAAATAGACCATGGTCTATTAAAATCAGCCTCAATCTTGACGTCTAGGGGAAAAACATCCACCTATACAGAACCTGCTGAAAAGAAGTTCCTGTATAGAtctattttcaaccagcaactatcataGAATCACACTGATCACATTTTTTACACTATACAGTGTTAGCGTCATCAGCTATTTACTTGGAATTAAACTTCAAATTATAATTTGCAGCTAGGCAGTAACTAAAGTGCACAAATCTTTCAGCCAATAACCAACATAAAGGCATTTCAAGGTCAAGATATCAGAATAATTCATGCAACCGGAGACACCTAATATGGTccaactgaataaaaatatatagtgtcttcggaaagtattcagacaacttgaatttttccacattttgttaaccTCATTCCAAAAtgtatgaaatagtttttttcccctcatcaatctacgcacaataccccataatgacaaagcaaaaacagggttgtAGAGATTTTAGCTAAtttataacaaataaaaaaactgaaatatcacatttacataagtattcagaccctttactcagtactttgtcgaaatacctttggcagcgatgacagccttgagtcttcGAGGGTAGGATGATACAAGCttcgcacacctgtatttggggagtttctctcattcttctctccagatcctcacaagctctgtcaggttggatggggagtgttgctgcacagctactttcaggtgtctccagagatattcgatcaggttcaagttcgggctctggctggaccactcaaggacattcagagacttgtcccgaagccactcctgcattgtcttggatgcgtgcttagggttgttgtcctgttggaaggtgaaccttcgccccagtctgaggtcctgagcgctctggagcaggttttcatcaaggatctctctgtactttgctccgttcatctttctctcgattttgactagtctcccagtccctgccgctgaaaaacattcccacagcgtgatgctgccaccaccatgcttcaccgtagggattgtgccagatttcctccagacatggcgcttgacattcaggccaaagagttcaatcttggtttcatcagaggtctgagagtctttaggtgccttttggaaaactccaagtgggctgacatgtgccttttactgaggagtagcttccgtctggccactctatcataaattcctgattggtggagtgctgcagagatggttgtccttctggaaggttctctcatctccacagaggaactctagagcgctgtaagagtgaccatcgggttcttggtcacctccccaattgctcagtttggctgggcggccagctctaggatgagtcttggtggttctaaacttcttccatttaagaatgatggaggccactttgttcttggggaccttcaatgctgcagacattttttggtacccttccccagatctgtgcctcaactcaatcctgtctcagagctctacagacaattccttcgacctcaaggcttggtttttgctctgacatgcactgtcaactgtgggaccttatatagactggtgtgtgtctttccaatcatgtccaatcaattgaatttaccacaggtggactccaatcaagtgtagaaacatctcaaggatgatcaatggaaacggaatgcacctgagctcaagtttgagtctcatagcaaagggtctgaaacttatgtaaataaggtatttctgttttttatttgtaataaaatttgcaacaatttctaaaaacctgttttcacattgtcattatggggtattgtgtgtagattactgaggatttgtttttattgaatccatgttaaaataaggctgtaacgtaacaaagtgtggaaaaagtcaaggggtctgaatactttccaaaggcactgtatacagctAGAAATTGATAGCTTGACTTATCACACAGCAGAATTTACAAGCTTTCATTGGAGTTTGTCGTAAAAGGGTTATTTTATGTATAAAATGCATTGGTAACTACACATGAGTTAACGCAAATGTCTAGAAGATACTGAATTACCAAGAACTTGAGACTTGGGCATAAAACATTAGGACTTGCACTTgccttgatttgatttgagcttaCAATTCACAACTTGAGACTTTTTCTACATAACTTTTCTTGGACTTTAGGATTTGAAATTAACTTGTGACTTGAAATCAATGATTAGACAAAGGTAGGTCTATCTAAACATGAGTCATTGTTGCATATAGCTGCAAAATATGACCAATGAGACCTGAGACTTGCTCCAAAAATAACTTTTCTTGGATCCTTTACTTGTGACTTGAGATTTTTTGTGAGATTTACT

Function

NR:

description
PREDICTED: zinc finger protein 135-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU501019 True 5598 lncRNA 0.40 3 77903116 77908865

Neighbor

gene id symbol gene type direction distance location
gadd45ab LOC106560326 coding downstream 28273 77871765 ~ 77874843 (-)
LOC110524609 fam69a coding downstream 260967 77627457 ~ 77642149 (-)
LOC110524608 evi5 coding downstream 285405 77558322 ~ 77617711 (-)
LOC110524607 LOC106560317 coding downstream 346248 77548860 ~ 77556868 (-)
LOC110524605 LOC106560313 coding downstream 375255 77515118 ~ 77527861 (-)
znf648 LOC106560330 coding upstream 16350 77914925 ~ 77939001 (-)
glulb LOC106560331 coding upstream 74879 77983744 ~ 77987655 (-)
LOC110524621 med8 coding upstream 330903 78239768 ~ 78245830 (-)
hyi hyi coding upstream 474140 78383005 ~ 78387067 (-)
LOC110524635 LOC106560345 coding upstream 1310288 79219153 ~ 79237461 (-)
G442666 NA non-coding downstream 788 77901782 ~ 77902328 (-)
G442649 NA non-coding downstream 21165 77881225 ~ 77881951 (-)
G442644 NA non-coding downstream 32061 77870368 ~ 77871055 (-)
G442643 NA non-coding downstream 34459 77867288 ~ 77868657 (-)
G442620 NA non-coding downstream 69571 77758822 ~ 77833545 (-)
G442676 NA non-coding upstream 34408 77943273 ~ 77943849 (-)
G442680 NA non-coding upstream 44210 77953075 ~ 77953321 (-)
G442696 NA non-coding upstream 68778 77977643 ~ 77977982 (-)
G442703 NA non-coding upstream 82310 77991175 ~ 77991411 (-)
G442381 rpl5 other downstream 275902 77623299 ~ 77627214 (-)
G442115 NA other downstream 495981 77406742 ~ 77407135 (-)
G441630 NA other downstream 881741 77013999 ~ 77021375 (-)
G441483 NA other downstream 1000345 76902382 ~ 76902771 (-)
G441168 glrx2 other downstream 1312746 76586458 ~ 76590370 (-)
G442807 NA other upstream 172880 78081745 ~ 78082010 (-)
G444001 NA other upstream 1055766 78964631 ~ 78966029 (-)
G444691 LOC106605670 other upstream 1822122 79730987 ~ 79731536 (-)
G445115 NA other upstream 2073596 79982461 ~ 79987704 (-)

Expression


Co-expression Network