G443360


Basic Information

Item Value
gene id G443360
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 78508751 ~ 78528411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU501821
gtaaagggagaagagagtagactacagtagaaataatagggagaagagagtagactacagtagaagtgaaaagggagaagagagtagactacagtagaagataaaagggagaagagagtagactacagtagaagagaatagggataagagagtagactacagtaaagataatagggagaagagagtagactacagtagaagataaaagggagaagagagtagactacagtacaagtgaaaagggagaagagagtagactacagtagaagagaaaagggagaatagagtagactacaggagaatggaatagggagaagagagtagactacagtagaagagaaaatggagaagagagtagactacagcagaatagaatagggagaagagagtagactacaatAGAAGTGAAAAGGGATAAGagggtagactacagtagaagtgaaaagggagaagagagtagactacagtagaagtgaaaagggagaagagagtagactacagtagaagataaaagggagaagagagtagactacagtagaagagaatagggagaagagagtagactacagtaaagataatagggagaagagagtagactacagtagaatagaatagggagaagagagtagactacagcagaagtgaatagggagaagagagtagactacagtagaatagaatagggagaagagagtagactacagcagaagtgaatagggagaagagagtagactacagtagaagagaatagggagaagagagtagactacagtagaagataaaagggagaagagagtagactacagtacaagtgaaaagggagaagagagtagactacagtagaagataaaagggagaagagagtaggctacagtagaagagaatagggagaagagagtagactacagtaaagataatagggagaagagagtagactacagtagaagataaaagggagaagagagtagactgcagtagaagagaatagggagaagagagtagactacagtagaagagaataggaagaagagagtagactacagtagaagagaatagggagaagagagtagactacagtagaagataaaagggagaagacagtagactacagtacaagtgaaaagggagaagagagtagactacagtagaagagaaaagggagaagagagtagactacagtagaatggaatagggagaagagagtagactacagtagaagagaaaagggagaagagagtagactacagtagaagataaaagggagaagagagtagactacagtacaagtgaaaagggagaagagagtagactacagtagaagagaaaagggagaatagagtagactacagtagaatggaatagggagaagagagtagactacagtagaagagaaaaggg
>TU501818
gtaaagggagaagagagtagactacagtagaagtgaaaagggagaagagagtagactacagtagaagagaaaagggagaatagagtagactacagtataatggaatagggagaagagagtagactacagtagaagagaaaagggagaagagagtagactacagcagaatagaatagggagaagagagtagactacagtagaagtgaaaagggagaagagagtagactacagtagaaggtaatagggagaagagagtagactacagtagaatagaatagggagaagagagtagactacagtagaagataaaagggagaagagactagactacagtagaatagaatagggagaagagagtagactacagtagaagtgaaaagggagaagagagtaga
>TU501819
gtaaagggagaagagagtagactacagtagaagtgaaaagggagaagagagtagactacagtagaagagaaaggggagaagagagtagactacagtagaatggaatagggagaagagagtagactacagtacaagtgaaaagggagaagagtgtagactacagtacaagtgaaaagggagaagagagtagactacagtaaagataatagggagaagagagtagactacagtagaagtgaaaagggagaagagagtagactacagtagaagataaaagggagaagagagtagactacagtagaagagaatagggataagagagtagactacagtaaagataatagggagaagagagtagactacagtagaagagaatagggagaagagagtagactacagtagaagataaaagggagaagagagtagactacagtacaagtgaaaagggagaagagagtagactacagtagaagagaaaagggagaatagagtagactacagtagaagataaaagggagaagagagtagactacagtagaagagaatagggagaagagagtagactacagtaaagctaatagggagaagagagtagactacagtagaagagaaaagggagaagagagtagactagagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU501821 False 1398 lncRNA 0.40 3 78508751 78528411
TU501818 False 395 lncRNA 0.40 2 78520090 78528411
TU501819 True 637 lncRNA 0.40 2 78521170 78528411

Neighbor

gene id symbol gene type direction distance location
hyi hyi coding downstream 121684 78383005 ~ 78387067 (-)
LOC110524621 med8 coding downstream 262921 78239768 ~ 78245830 (-)
glulb LOC106560331 coding downstream 521096 77983744 ~ 77987655 (-)
znf648 LOC106560330 coding downstream 569750 77914925 ~ 77939001 (-)
gadd45ab LOC106560326 coding downstream 633908 77871765 ~ 77874843 (-)
LOC110524635 LOC106560345 coding upstream 690742 79219153 ~ 79237461 (-)
LOC118964722 LOC106584191 coding upstream 714836 79243247 ~ 79282591 (-)
LOC118964780 NA coding upstream 765848 79294259 ~ 79294385 (-)
cdh2 LOC106560349 coding upstream 857129 79385540 ~ 79459507 (-)
LOC118964535 NA coding upstream 1008173 79536584 ~ 79606825 (-)
G443304 NA non-coding downstream 22553 78485991 ~ 78486198 (-)
G443224 NA non-coding downstream 79611 78426645 ~ 78429140 (-)
G443189 NA non-coding downstream 139968 78367502 ~ 78368783 (-)
G443169 NA non-coding downstream 166878 78340415 ~ 78341873 (-)
G443167 NA non-coding downstream 170775 78337758 ~ 78337976 (-)
G443397 NA non-coding upstream 42409 78570820 ~ 78571051 (-)
G443411 NA non-coding upstream 55062 78583473 ~ 78583678 (-)
G443415 NA non-coding upstream 56688 78585099 ~ 78585453 (-)
G443432 NA non-coding upstream 75944 78604355 ~ 78604897 (-)
G443478 NA non-coding upstream 109083 78637494 ~ 78637718 (-)
G442807 NA other downstream 426741 78081745 ~ 78082010 (-)
G442381 rpl5 other downstream 881537 77623299 ~ 77627214 (-)
G442115 NA other downstream 1101616 77406742 ~ 77407135 (-)
G441630 NA other downstream 1487376 77013999 ~ 77021375 (-)
G441483 NA other downstream 1605980 76902382 ~ 76902771 (-)
G444001 NA other upstream 436220 78964631 ~ 78966029 (-)
G444691 LOC106605670 other upstream 1202576 79730987 ~ 79731536 (-)
G445115 NA other upstream 1454050 79982461 ~ 79987704 (-)
G445197 NA other upstream 1648351 80176762 ~ 80177080 (-)

Expression


Co-expression Network