XLOC_023573 (trdmt1)


Basic Information

Item Value
gene id XLOC_023573
gene name trdmt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 32151629 ~ 32196412 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046604
GGTCATGTTTTCGGGGACTCTCATGAGCCATGCTTGAAAAGCTGCTGTCAAAACATCACATACCTCATCTAAAAGTGAAATATGGAGAACACGGAGCGACTGAGAGTATTTGAACTATACAGCGGGATAGGAGGAATGCATTATGCTTTAAAGGAGAGCTTAGTTCCAGCGGAAGTTGTAGCTGCTGTGGATGTCAACACAACAGCCAATCTAATCTACAAGCACAACTTCCCCACTACACAACTCTTGCCAAAAACCATAGAGGGAATGACGTTACAGGATTTTGACAGGCTGAATTTTGACATGATTTTGATGAGCCCACCGTGTCAACCTTTCACCAGGATTGGTTTGCAGGGAGATGTTGCCGACCCTAGAACAAAGAGCTTCCTGTATATCCTGGATCTTCTGCCAAGGCTCAGCAAGCGGCCACGCTTCATTCTGCTGGAGAATGTGAAGGGCTTTGAGAGCTCAGCTGCAAGGGATGCTTTGCTTCAGACCCTGAGAGAGTGCGACTacagctttcaggagtttctgaTTTCTCCAACATCTCTTGGGATCCCTAATTCTAGGCTCAGATACTTCCTGATTGCAAAGAGAGCACCAGAAACCTTCTCTTTCCCTGTTTCAACTGAGATTATTGAGGGCTTCCCCATGTCTGAATCTACAGACGGTCTCTCTGTTCCATATGATCATCCCACATCATCTGCATCTGAGAGAGAAAAGACGATCATGTTTAAGCTAGAGACGGAAGAAGATTTGGAAAGGAAGAGAAAGCAGAACAGTCAGGAATCAGTCAGGAGGTTGCTGGACTTTCtgcaggaggaggaagaggacaTGGAGCCGTATCTGCTGCCTCCCAAAACCCTGCTCAGATACGCTCTGGTGATGGATATAGTTCAGCCAAGCAGCAGGAGATCGGTCTGCTTTACTAAAGGgtACGGTCATTATGTAGAGGGCACGGGCTCCGTCCTGCAGTCATGTATGGATGTGGATCTGGAGACGGTGTTTAAGAATCTGGATCAGCTTTCAGAGGAAGACAAACTCAAGCAGCTCCTCAGGCTCAAGCTCAGATACTTCACTCCCAGAGAAATCAGCAGACTCATGGGCTTCCCGGATCATTTCACATTTCCAAAGCACATTTCCTTCAAACAGCAGTACCGTGTGTTGGGGAACAGCCTGAACGTCCACGTAGTTTCACATCTTATACGTCTAATGCTCTCAAAATAGTTGTATATGTTATAGATAAATGTGATATACattgttgtattttgtttttattttctgtaaatgtgtatatatattaataaataatttgttgatgttttt
>TCONS_00046605
CCGGTTTGTCGGTCATTGTTGCGAAGTTGGGagaaaatgttcaaaaaaaaagtgtgtttacaGATTTCAGAGACAGCAGAAAGTATACAACGTACACTGCTGCGAAATTCAACGTTCCCCAGCTACCGTCACCTGACGTCTTTCTGGTGGCTAATCGAGCCATCCATTCACAAAATCATTCGTGTGTCCAGGGCTAAATCTGCTGCTAGAAAGCAGGAAGACGTCATGGATGTACTGCCACCATCAGAGAAACAACAGAGGAAACTTCATTCTTGTCAATTTACTCCAGCGTGGATCTTCAGTGCCTCGGGTTCACATGCAGCTCATTCCAGATCCTCGTTTTGGGTGGACTCGTTAATTATCTGCAATGGACGAAAAATCAAAAGGTTTCCTGTAGGTGGCGATCTCAATATCcagggccattttaacattgaGCAGATCCTGGTATTCCCGCAGATGACGTGCCATCTCATCCTTCATGTTGCGAATGTCGTCCTCCAGACGGCCGATGGTGTCCTGATAACCAGACGCCTCCATGGAGAAGCTGTCCTCTAGTTCTCTCATCTGACGCTCCAGAGACTCATTCTGAAATCATGAACGCAATGATATGCAATTACCCACCGTTCCTTTGAGAGCTTCCAAGTCACAAGTGAGAGCCTGGAGCTGGCGACGGTAATCATTGGCCTCCTGTTTGGCCAGACGGATAGTTTCATTGTTTCGAGCAGCAGCTTCTGACAGACTCCTGCAGGTTTCTGGAGGCCAGAGTCTCGTACTGCTGCCGGACGTCTTTCAGAGCGGCGGTCAGGTCAGGTTTGGCCACTTCCATATCGATCTGCAAATGCTGCTCCTGCATCTGGATCTGCATCTCAGCAAGTTCCTGTGGAGGTAGAGCTTAGTTCCAGCGGAAGTTGTAGCTGCTGTGGATGTCAACACAACAGCCAATCTAATCTACAAGCACAACTTCCCCACTACACAACTCTTGCCAAAAACCATAGAGGTCAGTCGTT

Function

symbol description
trdmt1 Predicted to enable methyltransferase activity. Predicted to act upstream of or within methylation. Is expressed in brain; immature eye; and liver. Orthologous to human TRDMT1 (tRNA aspartic acid methyltransferase 1).

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-041008-138 Predicted to enable methyltransferase activity. Predicted to act upstream of or within methylation. Is expressed in brain; immature eye; and liver. Orthologous to human TRDMT1 (tRNA aspartic acid methyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000034518

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046604 False 1326 mRNA 0.45 10 32151629 32173754
TCONS_00046605 True 1007 processed_transcript 0.48 7 32173138 32196412

Neighbor

gene id symbol gene type direction distance location
XLOC_023572 cubn coding downstream 1353 32035759 ~ 32150276 (-)
XLOC_023571 rsu1 coding downstream 125992 31952333 ~ 32025637 (-)
XLOC_023570 c1ql3a coding downstream 208943 31940504 ~ 31942686 (-)
XLOC_023569 si:ch73-78o10.1 coding downstream 246629 31896724 ~ 31905000 (-)
XLOC_023568 steap2 coding downstream 305263 31832458 ~ 31846366 (-)
XLOC_023574 NA coding upstream 166021 32362433 ~ 32363362 (-)
XLOC_023575 NA coding upstream 210482 32406894 ~ 32408404 (-)
XLOC_023576 itprid1 coding upstream 218231 32414643 ~ 32452355 (-)
XLOC_023577 eif1b coding upstream 321503 32517915 ~ 32522655 (-)
XLOC_023578 PTCHD3 coding upstream 363983 32560395 ~ 32563875 (-)
XLOC_023665 dre-mir-735 misc upstream 5981549 38177961 ~ 38178027 (-)
XLOC_023567 CT737162.3 non-coding downstream 365052 31786463 ~ 31786577 (-)
XLOC_023566 NA non-coding downstream 395278 31755247 ~ 31756351 (-)
XLOC_023565 NA non-coding downstream 434148 31709501 ~ 31717481 (-)
XLOC_023564 CABZ01029420.1 non-coding downstream 511202 31640312 ~ 31640427 (-)
XLOC_023563 NA non-coding downstream 693435 31455086 ~ 31458194 (-)
XLOC_023581 NA non-coding upstream 511029 32707441 ~ 33221175 (-)
XLOC_023587 NA non-coding upstream 1353450 33549862 ~ 33670492 (-)
XLOC_023594 NA non-coding upstream 1638412 33834824 ~ 33839361 (-)

Expression


Co-expression Network